Factsheet for TraesCS1D01G141800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G521600.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1
TraesCS5A01G059400.1
TraesCS5B01G066700.1
TraesCS5D01G070900.1
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT3G53180.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT3G53180.1	TraesCS2D01G523400.1	AT1G14340.1	21798944
AT3G53180.1	TraesCS5A01G059400.1	AT2G31955.1	21798944
AT3G53180.1	TraesCS5B01G066700.1	AT2G31955.1	21798944
AT3G53180.1	TraesCS5D01G070900.1	AT2G31955.1	21798944
AT3G53180.1	TraesCS7A01G019000.1	AT4G25660.1	21798944
AT3G53180.1	TraesCS7D01G016100.1	AT4G25660.1	21798944
AT3G53180.1	TraesCSU01G065800.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G158600.1	Wheat	cytosol	97.74	97.74
TraesCS1A01G143000.1	Wheat	cytosol	96.67	96.79
HORVU1Hr1G038060.9	Barley	cytosol	94.89	94.67
Os10t0456500-02	Rice	plasma membrane	83.61	83.31
Zm00001d031055_P001	Maize	cytosol	15.91	83.23
Zm00001d032815_P011	Maize	cytosol	82.78	82.78
EER91525	Sorghum	cytosol	82.54	82.54
Zm00001d047936_P001	Maize	cytosol	17.34	81.56
Zm00001d044569_P001	Maize	cytosol	17.34	81.56
Zm00001d033947_P001	Maize	cytosol	10.69	80.36
TraesCS6D01G065600.1	Wheat	cytosol	73.87	76.32
GSMUA_AchrUn_...	Banana	cytosol	25.65	67.5
PGSC0003DMT400072665	Potato	cytosol	27.55	65.72
Solyc10g083830.1.1	Tomato	extracellular	47.03	64.6
GSMUA_AchrUn_...	Banana	cytosol	39.31	64.02
Solyc01g056400.1.1	Tomato	endoplasmic reticulum, extracellular	4.99	63.64
VIT_08s0007g04670.t01	Wine grape	cytosol	63.3	63.45
KRH32570	Soybean	cytosol, nucleus	61.52	61.96
AT3G53180.1	Thale cress	cytosol	62.35	61.62
Bra006975.1-P	Field mustard	cytosol	61.76	61.39
CDX78151	Canola	cytosol	61.76	61.39
CDX73575	Canola	cytosol	59.62	61.22
CDY13313	Canola	cytosol	59.14	60.88
Bra028548.1-P	Field mustard	cytosol	59.03	60.83
CDX67559	Canola	cytosol	59.86	60.58
Zm00001d021367_P001	Maize	cytosol	14.49	58.94
Solyc10g083550.1.1	Tomato	cytosol	25.65	54.14
PGSC0003DMT400024814	Potato	cytosol	18.76	52.49
KRH32567	Soybean	endoplasmic reticulum	26.84	52.44
PGSC0003DMT400048935	Potato	cytosol	15.56	48.7
Solyc06g011330.1.1	Tomato	cytosol	16.86	47.65
PGSC0003DMT400072398	Potato	cytosol	26.48	47.55
PGSC0003DMT400072666	Potato	cytosol	47.03	46.75
Solyc10g083850.1.1	Tomato	cytosol	45.96	46.46
Solyc10g083840.1.1	Tomato	cytosol	8.55	44.72
KRH75546	Soybean	plastid	12.11	44.35
Solyc01g056430.1.1	Tomato	cytosol	17.34	44.24
PGSC0003DMT400024816	Potato	cytosol	16.51	43.44
Solyc01g056450.1.1	Tomato	cytosol	12.23	42.21
Solyc01g056390.1.1	Tomato	cytosol, nucleus	5.34	41.28
Solyc06g011290.1.1	Tomato	cytosol	18.29	39.49
PGSC0003DMT400048929	Potato	cytosol, plastid	7.96	38.95
PGSC0003DMT400048927	Potato	cytosol	6.18	33.99

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.10.20.70	Gene3D:3.20.20.140
Gene3D:3.30.590.10	MapMan:35.2	InterPro:Amidohydro-rel	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356
GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	InterPro:Gln_synt_N	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_cat_dom	InterPro:IPR036651	InterPro:Metal_Hydrolase
PFAM:PF00120	PFAM:PF04909	PANTHER:PTHR43785	PANTHER:PTHR43785:SF2	SMART:SM01230	SUPFAM:SSF51556
SUPFAM:SSF54368	SUPFAM:SSF55931	EnsemblPlantsGene:TraesCS1D01G141800	EnsemblPlants:TraesCS1D01G141800.1	:	:

Description

No Description!

Coordinates

chr1D:+:196470971..196479517

Molecular Weight (calculated)

93251.4 Da

IEP (calculated)

5.894

GRAVY (calculated)

-0.108

Length

842 amino acids

Sequence
(BLAST)

001: MEARYAELRR AVEETAAVDA HAHNLVDTAS SLPFLRCFSE ADGDALAFAP HSLSFKRSLK EIAALYGCEA SLEKVEEFRK AQGLSSIGSK CFQAANVSAI
101: LVDDGLAFDK MLELEVHKEF VPTVGRVLRI EWLAETIIND DSFSGSSWTL DSFTETFVAK LKSVASKIVG LKSIAAYRSG LEIDPCVSKT DAEDGLRKEL
201: TGQRPLRITN KSLIDYLFTC SLDISVQSHL PMQIHTGFGD KDLDLRKCNP LYLRAVLEDE RFAKCQLVLL HASYPYSKEA SYLASVYSQV YLDFGLAIPK
301: LSVQGMVSSL KELLELAPIN KVMFSSDGYA FPETYYLGSR RARDVVYRVL SAACEDGDLS IEEAIDAVED IFRRNASDLY KLNVANGSIH QKTMIADSTI
401: ASSCVEQDVL FVRIVWNDAS GQHRCRVVPA GRFYEIARNK GVGLTFASMG MTSFCDGPAD GTNLTGVGEI RLMPDMSTLL RLPWSTREEM VIADMQIRPG
501: EAWEYCPRYV LRKVTKVLLD EFNVTMKAGF ENEFYLRRKL VSEGHERWVP YDNSSYCSTS SFDGASSILQ EVYSSLKAAN IVVEQLHAEA GKGQFEVALK
601: YVLCTLAADN LIYAREIIKS VARKHGLIAT FLPKPDLNDI GSGSHVHLSL WKNDQNVFMG SNEYSHYGMS NVGEQFLAGV YHHLPSILAF TAPHPNSYDR
701: IQPNTWSGAY LCWGKENREA PLRTACPPGV PLDMVSNFEI KSFDGCANPH LGLAAIVAAG IDGLRKGLKL PEPIESNPAD YATKLKRLPQ DLLESVESLA
801: ADKTLHELIG DKLITAVIAV RKAEIDHYSK NPGAFGDLIH RY

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.