Factsheet for PGSC0003DMT400072665

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018924
PGSC0003DMT400065786
PGSC0003DMT400074537

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	PGSC0003DMT400065786	AT1G14340.1	21798944
AT3G53180.1	PGSC0003DMT400074537	AT2G31955.1	21798944
AT3G53180.1	PGSC0003DMT400018924	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031055_P001	Maize	cytosol	28.61	62.73
Zm00001d047936_P001	Maize	cytosol	31.16	61.45
Zm00001d044569_P001	Maize	cytosol	31.16	61.45
Zm00001d033947_P001	Maize	cytosol	18.7	58.93
Solyc10g083830.1.1	Tomato	extracellular	98.02	56.44
PGSC0003DMT400072398	Potato	cytosol	64.87	48.83
Zm00001d021367_P001	Maize	cytosol	27.2	46.38
GSMUA_AchrUn_...	Banana	cytosol	65.72	44.87
PGSC0003DMT400024816	Potato	cytosol	39.94	44.06
PGSC0003DMT400048929	Potato	cytosol, plastid	20.11	41.28
PGSC0003DMT400048927	Potato	cytosol	16.71	38.56
VIT_08s0007g04670.t01	Wine grape	cytosol	74.5	31.31
KRH32570	Soybean	cytosol, nucleus	68.56	28.95
CDX73575	Canola	cytosol	66.86	28.78
CDY13313	Canola	cytosol	66.57	28.73
Bra028548.1-P	Field mustard	cytosol	66.01	28.52
Bra006975.1-P	Field mustard	cytosol	67.99	28.34
CDX78151	Canola	cytosol	67.99	28.34
CDX67559	Canola	cytosol	66.57	28.25
TraesCS1A01G143000.1	Wheat	cytosol	66.29	27.82
AT3G53180.1	Thale cress	cytosol	67.14	27.82
HORVU1Hr1G038060.9	Barley	cytosol	66.29	27.73
TraesCS1B01G158600.1	Wheat	cytosol	66.01	27.67
TraesCS1D01G141800.1	Wheat	golgi	65.72	27.55
Zm00001d032815_P011	Maize	cytosol	64.02	26.84
EER91525	Sorghum	cytosol	63.74	26.72
Os10t0456500-02	Rice	plasma membrane	63.46	26.51
TraesCS6D01G065600.1	Wheat	cytosol	57.51	24.91
HORVU6Hr1G012290.5	Barley	cytosol	58.92	24.67
PGSC0003DMT400072666	Potato	cytosol	54.96	22.9
GSMUA_AchrUn_...	Banana	cytosol	0.57	0.62
KRH32567	Soybean	endoplasmic reticulum	0.28	0.23
PGSC0003DMT400024814	Potato	cytosol	0.0	0.0
Solyc10g083840.1.1	Tomato	cytosol	0.0	0.0
KRH75546	Soybean	plastid	0.0	0.0
PGSC0003DMT400048935	Potato	cytosol	0.0	0.0

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.30.590.10	MapMan:35.2
GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152
InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_cat_dom	UniProt:M1CQR3	PFAM:PF00120	EnsemblPlantsGene:PGSC0003DMG400028276	PGSC:PGSC0003DMG400028276
EnsemblPlants:PGSC0003DMT400072665	PANTHER:PTHR43785	PANTHER:PTHR43785:SF2	SMART:SM01230	SUPFAM:SSF55931	UniParc:UPI00029506F3

Description

Glutamate-ammonia ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400028276]

Coordinates

chr10:+:55312310..55318068

Molecular Weight (calculated)

39117.0 Da

IEP (calculated)

5.500

GRAVY (calculated)

-0.092

Length

353 amino acids

Sequence
(BLAST)

001: MVLADMYIEP GKVWEYCPRE ALRRVSKVLK DEFNLVVNAG FENEFYLLKS ILRNGKEEWT PFDRTSYCST SSFDAASPIL EEVFASLQSL NIAVEQLHAE
101: AGKGQFEIAL KYTDCFRAAD SLIFAREVIK AVARKHGLLA TFVPKYALDD IGSGSHVHIS LSKNGENVFM TSGESSRYGM SKIGEAFMAG VLNHLPAILP
201: FTAPLPNSYD RIQPSMWSGA YLCWGKENRE APLRAASPPG VAHGLISNFE IKAFDGCANP YLGLAAIITA GIDGLRRNLS LPEPVDGDPD ILKENLQRLP
301: VTLAESVEAL EKDSLFKEMI GEKLLVAIIG VRKAEVKYYS ENKEGYKDLI FKY

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.