Factsheet for TraesCS6D01G065600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G521600.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1
TraesCS5A01G059400.1
TraesCS5B01G066700.1
TraesCS5D01G070900.1
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT3G53180.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT3G53180.1	TraesCS2D01G523400.1	AT1G14340.1	21798944
AT3G53180.1	TraesCS5A01G059400.1	AT2G31955.1	21798944
AT3G53180.1	TraesCS5B01G066700.1	AT2G31955.1	21798944
AT3G53180.1	TraesCS5D01G070900.1	AT2G31955.1	21798944
AT3G53180.1	TraesCS7A01G019000.1	AT4G25660.1	21798944
AT3G53180.1	TraesCS7D01G016100.1	AT4G25660.1	21798944
AT3G53180.1	TraesCSU01G065800.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G012290.5	Barley	cytosol	91.41	88.37
Zm00001d047936_P001	Maize	cytosol	16.69	75.98
Zm00001d044569_P001	Maize	cytosol	16.69	75.98
Zm00001d031055_P001	Maize	cytosol	14.97	75.78
TraesCS1D01G141800.1	Wheat	golgi	76.32	73.87
EER91525	Sorghum	cytosol	74.85	72.45
Os10t0456500-02	Rice	plasma membrane	74.48	71.83
Zm00001d032815_P011	Maize	cytosol	73.99	71.62
Zm00001d033947_P001	Maize	cytosol	9.57	69.64
GSMUA_AchrUn_...	Banana	cytosol	37.42	58.99
GSMUA_AchrUn_...	Banana	cytosol	22.7	57.81
PGSC0003DMT400072665	Potato	cytosol	24.91	57.51
Zm00001d021367_P001	Maize	cytosol	14.48	57.0
Solyc10g083830.1.1	Tomato	extracellular	42.58	56.61
VIT_08s0007g04670.t01	Wine grape	cytosol	58.16	56.43
KRH32570	Soybean	cytosol, nucleus	57.42	55.98
CDX73575	Canola	cytosol	55.83	55.49
CDY13313	Canola	cytosol	55.09	54.89
Bra028548.1-P	Field mustard	cytosol	54.97	54.83
Bra006975.1-P	Field mustard	cytosol	56.69	54.55
CDX78151	Canola	cytosol	56.69	54.55
AT3G53180.1	Thale cress	cytosol	56.69	54.23
CDX67559	Canola	cytosol	54.85	53.73
Solyc01g056400.1.1	Tomato	endoplasmic reticulum, extracellular	4.29	53.03
Solyc10g083550.1.1	Tomato	cytosol	24.17	49.37
PGSC0003DMT400024814	Potato	cytosol	17.42	47.18
Solyc06g011330.1.1	Tomato	cytosol	16.44	44.97
KRH32567	Soybean	endoplasmic reticulum	23.68	44.78
Solyc01g056390.1.1	Tomato	cytosol, nucleus	5.89	44.04
PGSC0003DMT400072398	Potato	cytosol	25.28	43.92
Solyc10g083850.1.1	Tomato	cytosol	44.42	43.46
PGSC0003DMT400072666	Potato	cytosol	44.42	42.74
Solyc10g083840.1.1	Tomato	cytosol	8.22	41.61
Solyc01g056430.1.1	Tomato	cytosol	16.56	40.91
PGSC0003DMT400048935	Potato	cytosol	13.37	40.52
PGSC0003DMT400024816	Potato	cytosol	15.83	40.31
Solyc01g056450.1.1	Tomato	cytosol	11.78	39.34
PGSC0003DMT400048929	Potato	cytosol, plastid	8.22	38.95
KRH75546	Soybean	plastid	10.43	36.96
Solyc06g011290.1.1	Tomato	cytosol	16.81	35.13
PGSC0003DMT400048927	Potato	cytosol	6.26	33.33

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.10.20.70	Gene3D:3.20.20.140
Gene3D:3.30.590.10	MapMan:35.2	InterPro:Amidohydro-rel	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356
GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	InterPro:Gln_synt_N	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_cat_dom	InterPro:IPR036651	InterPro:Metal_Hydrolase
PFAM:PF00120	PFAM:PF04909	PANTHER:PTHR43785	PANTHER:PTHR43785:SF2	SMART:SM01230	SUPFAM:SSF51556
SUPFAM:SSF54368	SUPFAM:SSF55931	EnsemblPlantsGene:TraesCS6D01G065600	EnsemblPlants:TraesCS6D01G065600.1	SEG:seg	:

Description

No Description!

Coordinates

chr6D:-:32058028..32073111

Molecular Weight (calculated)

90284.0 Da

IEP (calculated)

6.683

GRAVY (calculated)

-0.111

Length

815 amino acids

Sequence
(BLAST)

001: MEAKYADLRR AAEETAVVDA HAHDLVAAGS TLPFIGCFSE ADGDALALAP HSLPFKRSLR DIAALYDCDP SLEKVEEFRR AQGLSSITSK CFQAANISAL
101: VVDDVSTLDK TLELESHKAF APKVYRVVGI ETLAETIINE VANKIVGLKS MAAHRSGLEI DPSVSKVDAE DGLRKELATR RPLRITNKNL FDYIFIHSLE
201: IAVEFHLPMQ IHTGFGDREL GLRHCTLFHL RAVLEDKRFV KCQIVLLNAS YPFSREGSYL ASVYSQFYLD FGFAFPKLSV QGITSSLKEL LERAPIKKVM
301: FSTDGYAFPE TYYLGAKWAR DVVYRVLSAA CEDGDLTIQE AIEAVEDIFR RNALHLYKLN VFHEKTTSID DNTISSSSCL GKDDVILVRM VWNDASGQHR
401: CRALPAERFY GIARNKGVGL GIAAVGFTSF RDAPAVGTNL TCAGEEIRLV ADMSTLLRIP WSRNEEMVMV DMLTGSGEAS KYCPRNALRK VTKVLLDEFN
501: VAGFENEFYL LRKSFSEGHE HWVPYDNSSY CSTSAFDGAS FMLKEAHSCL KAAGIVVEQM HAEGGNGQFE IALKYVLCTL AADNQIYARE IIKSIARKHG
601: VIATFLPKPD LNELGSGCHV HLSLWKNDQN VFMGSNKYNY HGMSNTGERF LAGVYHHLPS ILAFTAPHPH SYDRIQPNTF TGAYLCWGKE NREAPLRTSC
701: PPGVPPDFVS NFEIRSFDGC ANPHLGLAAI VAAGIDGLRR GLKLPPPTEL NPADCASHER LPHDLLGSVE ALAADKIFHE LMGDKLVTSV IAMRKAEIEH
801: YAKNPGAVHH LIHRY

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.