Factsheet for Solyc01g056400.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3
mitochondrion 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073730.2.1
Solyc02g082060.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT3G53180.1	Solyc01g073730.2.1	AT2G31955.1	21798944
AT3G53180.1	Solyc02g082060.1.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g056430.1.1	Tomato	cytosol	81.82	16.36
Solyc06g011290.1.1	Tomato	cytosol	66.67	11.28
GSMUA_AchrUn_...	Banana	cytosol	53.03	10.94
Solyc10g083830.1.1	Tomato	extracellular	66.67	7.18
Solyc10g083850.1.1	Tomato	cytosol	65.15	5.16
CDX73575	Canola	cytosol	62.12	5.0
TraesCS1A01G143000.1	Wheat	cytosol	63.64	4.99
Zm00001d032815_P011	Maize	cytosol	63.64	4.99
TraesCS1D01G141800.1	Wheat	golgi	63.64	4.99
TraesCS1B01G158600.1	Wheat	cytosol	63.64	4.99
EER91525	Sorghum	cytosol	63.64	4.99
HORVU1Hr1G038060.9	Barley	cytosol	63.64	4.98
Os10t0456500-02	Rice	plasma membrane	62.12	4.85
Bra028548.1-P	Field mustard	cytosol	59.09	4.77
CDY13313	Canola	cytosol	59.09	4.77
Bra006975.1-P	Field mustard	cytosol	60.61	4.72
CDX78151	Canola	cytosol	60.61	4.72
AT3G53180.1	Thale cress	cytosol	59.09	4.58
CDX67559	Canola	cytosol	57.58	4.57
TraesCS6D01G065600.1	Wheat	cytosol	53.03	4.29
HORVU6Hr1G012290.5	Barley	cytosol	54.55	4.27
GSMUA_AchrUn_...	Banana	cytosol	7.58	0.97
Solyc10g083550.1.1	Tomato	cytosol	3.03	0.5
Solyc01g056450.1.1	Tomato	cytosol	0.0	0.0
Solyc06g011330.1.1	Tomato	cytosol	0.0	0.0
Solyc01g056390.1.1	Tomato	cytosol, nucleus	0.0	0.0
Solyc10g083840.1.1	Tomato	cytosol	0.0	0.0
Zm00001d021367_P001	Maize	cytosol	0.0	0.0
Zm00001d031055_P001	Maize	cytosol	0.0	0.0
Zm00001d033947_P001	Maize	cytosol	0.0	0.0
Zm00001d044569_P001	Maize	cytosol	0.0	0.0
Zm00001d047936_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc01g056400.1.1	EnsemblPlantsGene:Solyc01g056400.1	Gene3D:3.20.20.140	PANTHER:PTHR20852	PANTHER:PTHR20852:SF65	UniParc:UPI0002763556
UniProt:K4AVK8	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr1:+:54090609..54091035

Molecular Weight (calculated)

7401.1 Da

IEP (calculated)

5.537

GRAVY (calculated)

0.391

Length

66 amino acids

Sequence
(BLAST)

1: MLLHASFPFL KEASYLASIY PQIYLDFGLR IPKPNFHGLM SSVKEILDLA PINEVMINSS GITFAE

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.