Factsheet for Bra006975.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005924.1-P
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra016705.1-P
Bra019660.1-P
Bra022872.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	Bra016705.1-P	AT1G14340.1	21798944
AT3G53180.1	Bra019660.1-P	AT1G14340.1	21798944
AT3G53180.1	Bra022872.1-P	AT2G31955.1	21798944
AT3G53180.1	Bra010452.1-P	AT4G25660.1	21798944
AT3G53180.1	Bra013908.1-P	AT4G25660.1	21798944
AT3G53180.1	Bra013910.1-P	AT4G25660.1	21798944
AT3G53180.1	Bra005924.1-P	AT5G07110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78151	Canola	cytosol	100.0	100.0
Bra028548.1-P	Field mustard	cytosol	84.18	87.27
AT3G53180.1	Thale cress	cytosol	85.71	85.21
VIT_08s0007g04670.t01	Wine grape	cytosol	67.89	68.45
PGSC0003DMT400072665	Potato	cytosol	28.34	67.99
KRH32570	Soybean	cytosol, nucleus	66.12	66.99
Solyc10g083830.1.1	Tomato	extracellular	48.29	66.72
Zm00001d031055_P001	Maize	cytosol	12.51	65.84
Zm00001d047936_P001	Maize	cytosol	13.34	63.13
Zm00001d044569_P001	Maize	cytosol	13.34	63.13
GSMUA_AchrUn_...	Banana	cytosol	38.37	62.86
GSMUA_AchrUn_...	Banana	cytosol	23.49	62.19
TraesCS1A01G143000.1	Wheat	cytosol	61.39	61.83
TraesCS1D01G141800.1	Wheat	golgi	61.39	61.76
TraesCS1B01G158600.1	Wheat	cytosol	61.28	61.64
HORVU1Hr1G038060.9	Barley	cytosol	61.39	61.61
EER91525	Sorghum	cytosol	61.16	61.52
Zm00001d032815_P011	Maize	cytosol	60.92	61.28
Zm00001d033947_P001	Maize	cytosol	8.03	60.71
Solyc01g056400.1.1	Tomato	endoplasmic reticulum, extracellular	4.72	60.61
Os10t0456500-02	Rice	plasma membrane	60.09	60.24
TraesCS6D01G065600.1	Wheat	cytosol	54.55	56.69
PGSC0003DMT400024814	Potato	cytosol	19.95	56.15
Solyc10g083550.1.1	Tomato	cytosol	26.33	55.89
HORVU6Hr1G012290.5	Barley	cytosol	55.61	55.87
KRH32567	Soybean	endoplasmic reticulum	27.27	53.6
PGSC0003DMT400072666	Potato	cytosol	51.71	51.71
Solyc06g011330.1.1	Tomato	cytosol	18.06	51.34
PGSC0003DMT400048935	Potato	cytosol	16.29	51.3
KRH75546	Soybean	plastid	13.81	50.87
Solyc10g083850.1.1	Tomato	cytosol	49.94	50.78
PGSC0003DMT400072398	Potato	cytosol	27.75	50.11
Solyc10g083840.1.1	Tomato	cytosol	9.45	49.69
Solyc01g056430.1.1	Tomato	cytosol	19.13	49.09
Solyc01g056390.1.1	Tomato	cytosol, nucleus	6.26	48.62
Zm00001d021367_P001	Maize	cytosol	11.69	47.83
PGSC0003DMT400024816	Potato	cytosol	16.29	43.12
Solyc06g011290.1.1	Tomato	cytosol	19.72	42.82
Solyc01g056450.1.1	Tomato	cytosol	11.92	41.39
PGSC0003DMT400048929	Potato	cytosol, plastid	8.26	40.7
PGSC0003DMT400048927	Potato	cytosol	6.97	38.56

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.10.20.70	Gene3D:3.20.20.140
Gene3D:3.30.590.10	MapMan:35.2	InterPro:Amidohydro-rel	EnsemblPlantsGene:Bra006975	EnsemblPlants:Bra006975.1	EnsemblPlants:Bra006975.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp
InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_cat_dom	InterPro:IPR036651	UniProt:M4CRY3	InterPro:Metal_Hydrolase	PFAM:PF00120
PFAM:PF04909	PFAM:PF16952	PANTHER:PTHR43785	PANTHER:PTHR43785:SF2	SMART:SM01230	SUPFAM:SSF51556
SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI0002542F12	SEG:seg	:	:

Description

AT3G53180 (E=0.0) | catalytic/ glutamate-ammonia ligase

Coordinates

chrA09:+:26600979..26605258

Molecular Weight (calculated)

93906.0 Da

IEP (calculated)

6.046

GRAVY (calculated)

-0.167

Length

847 amino acids

Sequence
(BLAST)

001: MEMEFKELKE AIDQVELVDA HAHNIVSLES SFPFIGTFSE ATGDALSFAP HSLSFKRNLR EIAQLYGTEV SLEAIEKHRQ ASGLHSFTSK CFKEAGISAL
101: LIDDGLKLDK KHDIEWHRDY VPFVGRVLRV ETLAEQILDE EISSSWTLDS FTKAFVERLT SYPFSWSFHE IVALKTVAAY RSGLDINTHV SKEAAENGLV
201: EVLQAGKPVR IGNKSLIDYI VTLSLEIAER HGLPLQIHTG FGDRDLDLRL ANPLHLRTLL EDKRFAKCRI VLLHASYPFS KEASYLSSVY SQVYLDFGLA
301: VPKLSVHGMV SSVKELLDLA PTKKVMFSTD GYASPETYYL GAKKAREVIY LVLRDACASG DLSLMEAIDA AKDIFSRNSI AFYKLNLDVN SSSPQRRISL
401: APQMKEPDVE EDSSSFVRII WVDTSGQQRC RAVQANRFNK SVKKSGIGLT HASMGMSSFT DGPAEESKLT GVGEIRLVPD LSTKRTIPWT KQESMVLADM
501: LLKPGEAWEY CPRETLRRVA KVLKDEFDLV MNAGFENEFY LLKNIVREGK EEYVPFDFGP YCSTSSYDAA SPLFHEIVPA LESLNITVEQ FHAESGKGQF
601: EVSLGYTVAS HAADNLVYTR EVIRSVARKH GLLATFVPKY DLCDIGSGSH VHLSLSKNGE NVFPASDKSS AHGMSSTGEE FMAGVLFHLP SILAVIAPLP
701: NSYDRIQPNT WSGAFQCWGK ENREAAIRTA SPPGAPDGLV TNFEIKTCDG AANPHLSLAI IMAAGIDGLR RHLQLPEPID TNPADVAATL KRLPESLSEA
801: VEALEKDQVL HELLGQKLLV AITGVRKSEV EYYSKNPDAC KQLIHRY

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.