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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000056.1-P
Bra000204.1-P
Bra000891.1-P
Bra000895.1-P
Bra002620.1-P
Bra003171.1-P
Bra003923.1-P
Bra005112.1-P
Bra005924.1-P
Bra006345.1-P
Bra007047.1-P
Bra008348.1-P
Bra008559.1-P
Bra008630.1-P
Bra009807.1-P
Bra009809.1-P
Bra010452.1-P
Bra011434.1-P
Bra012646.1-P
Bra012647.1-P
Bra013601.1-P
Bra013908.1-P
Bra013910.1-P
Bra014069.1-P
Bra014221.1-P
Bra014355.1-P
Bra015626.1-P
Bra016705.1-P
Bra019660.1-P
Bra020855.1-P
Bra021502.1-P
Bra021503.1-P
Bra021504.1-P
Bra021674.1-P
Bra021912.1-P
Bra022817.1-P
Bra023359.1-P
Bra023936.1-P
Bra024951.1-P
Bra027406.1-P
Bra027937.1-P
Bra028632.1-P
Bra032216.1-P
Bra035731.1-P
Bra036294.1-P
Bra036529.1-P
Bra037983.1-P
Bra038169.1-P
Bra039652.1-P
Bra040177.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G25660.1 Bra016705.1-P AT1G14340.1 21798944
AT4G25660.1 Bra019660.1-P AT1G14340.1 21798944
AT4G25660.1 Bra014069.1-P AT1G47260.1 21798944
AT4G25660.1 Bra032216.1-P AT1G47260.1 21798944
AT4G25660.1 Bra014221.1-P AT1G49850.1 21798944
AT4G25660.1 Bra039652.1-P AT1G49850.1 21798944
AT4G25660.1 Bra014355.1-P AT1G55190.1 21798944
AT4G25660.1 Bra037983.1-P AT1G55190.1 21798944
AT4G25660.1 Bra003923.1-P AT1G71480.1 21798944
AT4G25660.1 Bra008348.1-P AT1G78140.1 21798944
AT4G25660.1 Bra015626.1-P AT1G78140.1 21798944
AT4G25660.1 Bra021674.1-P AT2G30880.1 21798944
AT4G25660.1 Bra022817.1-P AT2G30880.1 21798944
AT4G25660.1 Bra021912.1-P AT2G34460.1 21798944
AT4G25660.1 Bra000056.1-P AT2G38360.1 21798944
AT4G25660.1 Bra005112.1-P AT2G38360.1 21798944
AT4G25660.1 Bra000204.1-P AT2G40765.1 21798944
AT4G25660.1 Bra021504.1-P AT3G13710.1 21798944
AT4G25660.1 Bra027406.1-P AT3G13710.1 21798944
AT4G25660.1 Bra023936.1-P AT3G20680.1 21798944
AT4G25660.1 Bra003171.1-P AT3G54120.1 21798944
AT4G25660.1 Bra007047.1-P AT3G54120.1 21798944
AT4G25660.1 Bra000895.1-P AT4G02080.1 21798944
AT4G25660.1 Bra036294.1-P AT4G02080.1 21798944
AT4G25660.1 Bra000891.1-P AT4G02150.1 21798944
AT4G25660.1 Bra008559.1-P AT4G02150.1 21798944
AT4G25660.1 Bra012646.1-P AT4G17720.1 21798944
AT4G25660.1 Bra012647.1-P AT4G17720.1 21798944
AT4G25660.1 Bra040177.1-P AT4G17720.1 21798944
AT4G25660.1 Bra013601.1-P AT4G22220.1 21798944
AT4G25660.1 Bra020855.1-P AT4G22220.1 21798944
AT4G25660.1 Bra010452.1-P AT4G25660.1 21798944
AT4G25660.1 Bra013908.1-P AT4G25660.1 21798944
AT4G25660.1 Bra013910.1-P AT4G25660.1 21798944
AT4G25660.1 Bra028632.1-P AT5G09450.1 21798944
AT4G25660.1 Bra023359.1-P AT5G12010.1 21798944
AT4G25660.1 Bra006345.1-P AT5G16250.1 21798944
AT4G25660.1 Bra008630.1-P AT5G16250.1 21798944
AT4G25660.1 Bra009807.1-P AT5G24990.1 21798944
AT4G25660.1 Bra009809.1-P AT5G24990.1 21798944
AT4G25660.1 Bra036529.1-P AT5G24990.1 21798944
AT4G25660.1 Bra024951.1-P AT5G47310.1 21798944
AT4G25660.1 Bra035731.1-P AT5G51180.1 21798944
AT4G25660.1 Bra002620.1-P AT5G58750.1 21798944
AT4G25680.1 Bra027937.1-P AT1G56330.1 21798944
AT4G25680.1 Bra038169.1-P AT1G56330.1 21798944
AT4G25680.1 Bra021674.1-P AT2G30880.1 21798944
AT4G25680.1 Bra022817.1-P AT2G30880.1 21798944
AT4G25680.1 Bra000056.1-P AT2G38360.1 21798944
AT4G25680.1 Bra005112.1-P AT2G38360.1 21798944
AT4G25680.1 Bra021504.1-P AT3G13710.1 21798944
AT4G25680.1 Bra027406.1-P AT3G13710.1 21798944
AT4G25680.1 Bra021502.1-P AT3G13720.1 21798944
AT4G25680.1 Bra021503.1-P AT3G13720.1 21798944
AT4G25680.1 Bra010452.1-P AT4G25660.1 21798944
AT4G25680.1 Bra013908.1-P AT4G25660.1 21798944
AT4G25680.1 Bra013910.1-P AT4G25660.1 21798944
AT4G25680.1 Bra010452.1-P AT4G25680.1 21798944
AT4G25680.1 Bra013908.1-P AT4G25680.1 21798944
AT4G25680.1 Bra013910.1-P AT4G25680.1 21798944
AT4G25680.1 Bra011434.1-P AT4G33350.1 21798944
AT4G25680.1 Bra005924.1-P AT5G07110.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY66007 Canola cytosol 100.0 100.0
CDY49480 Canola cytosol 97.64 98.02
Bra013910.1-P Field mustard cytosol 87.4 88.45
AT4G25680.1 Thale cress cytosol 86.61 87.3
AT4G25660.1 Thale cress cytosol 84.65 84.31
Bra013908.1-P Field mustard cytosol 79.13 82.04
KRH08874 Soybean cytosol 68.11 70.61
KRH38387 Soybean cytosol 67.32 68.95
VIT_16s0050g01050.t01 Wine grape cytosol 65.75 68.72
GSMUA_AchrUn_... Banana cytosol 57.48 58.87
KRH35244 Soybean cytosol, peroxisome, plastid 50.0 52.92
Zm00001d045580_P001 Maize cytosol 53.94 51.12
EER87703 Sorghum cytosol 53.54 50.75
Os06t0107000-01 Rice cytosol, nucleus 52.36 49.26
HORVU7Hr1G002080.2 Barley cytosol 37.8 48.73
TraesCS7A01G019000.1 Wheat cytosol 53.94 46.6
PGSC0003DMT400018924 Potato cytosol 38.19 45.75
TraesCSU01G065800.1 Wheat cytosol 53.15 45.61
Solyc02g082060.1.1 Tomato cytosol 36.61 43.66
TraesCS7D01G016100.1 Wheat nucleus 53.54 41.85
Bra009823.1-P Field mustard cytosol, mitochondrion 24.41 28.18
Bra020487.1-P Field mustard mitochondrion 23.62 27.78
Bra035161.1-P Field mustard cytosol 24.02 26.75
Bra003580.1-P Field mustard cytosol 22.83 25.44
Bra011312.1-P Field mustard nucleus 21.65 23.91
Bra012661.1-P Field mustard cytosol 19.68 23.36
Bra032034.1-P Field mustard nucleus, plasma membrane 22.83 23.29
Bra024951.1-P Field mustard cytosol 20.87 21.81
Bra014091.1-P Field mustard nucleus 21.65 19.57
Bra032229.1-P Field mustard nucleus 20.87 19.0
Bra007813.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole 23.62 10.95
Protein Annotations
EnsemblPlants:Bra010452.1EnsemblPlants:Bra010452.1-PEnsemblPlantsGene:Bra010452Gene3D:3.90.1720.30InterPro:PPPDE_domPANTHER:PTHR12378
PANTHER:PTHR12378:SF9PFAM:PF05903SMART:SM01179UniParc:UPI0002545A32UniProt:M4D1V2MapMan:19.4.1.7
Description
AT4G25680 (E=9e-128) | unknown protein
Coordinates
chrA08:-:14589396..14590554
Molecular Weight (calculated)
28110.1 Da
IEP (calculated)
7.863
GRAVY (calculated)
-0.465
Length
254 amino acids
Sequence
(BLAST)
001: MTEVVVHIYD VTNSGSEKTN NTILQINRFF KDGIGLGGIF HSAIQVYGDD EWSFGYCEQG TGVFSCPSTK NPMYTYREKI VLGKTDCTIF MVNQILRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK LPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNITSN VTNGSPQRPP GTLSSSENGN
201: LRLQGSWFKG LLNTAKPSTS TEMESKDEDA NHGVPNHQRK QSRDSVPIHP TAFG
Best Arabidopsis Sequence Match ( AT4G25680.1 )
(BLAST)
001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
Arabidopsis Description
At4g25680 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.