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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:
  • nucleus 1
  • plastid 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000895.1-P
Bra002403.1-P
Bra006619.1-P
Bra006975.1-P
Bra018576.1-P
Bra020182.1-P
Bra028548.1-P
Bra036294.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13710.1 Bra018576.1-P AT1G09180.1 21798944
AT3G13710.1 Bra006975.1-P AT3G53180.1 21798944
AT3G13710.1 Bra028548.1-P AT3G53180.1 21798944
AT3G13710.1 Bra000895.1-P AT4G02080.1 21798944
AT3G13710.1 Bra036294.1-P AT4G02080.1 21798944
AT3G13710.1 Bra002403.1-P AT5G22290.1 21798944
AT3G13710.1 Bra006619.1-P AT5G22290.1 21798944
AT3G13710.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51735 Canola plasma membrane 96.7 96.7
Bra027406.1-P Field mustard plasma membrane 75.27 75.69
AT3G13710.1 Thale cress plasma membrane 66.48 64.36
Bra037983.1-P Field mustard extracellular, plasma membrane 43.41 56.43
PGSC0003DMT400006409 Potato plasma membrane 56.04 56.04
Solyc03g121460.1.1 Tomato plastid 54.95 54.95
KRH23330 Soybean plastid 52.2 51.63
KRH10001 Soybean mitochondrion 52.2 51.63
Bra014355.1-P Field mustard cytosol, plasma membrane, plastid 53.3 51.32
GSMUA_Achr7P09070_001 Banana plastid 52.2 50.53
KRH47141 Soybean plasma membrane 48.9 50.0
KRH44167 Soybean plasma membrane 48.35 50.0
VIT_09s0002g02400.t01 Wine grape plastid 49.45 46.63
Zm00001d039455_P002 Maize extracellular, mitochondrion 47.25 44.56
EES00126 Sorghum plastid 46.7 44.27
Bra031001.1-P Field mustard plasma membrane 42.86 43.09
Bra025954.1-P Field mustard plasma membrane 42.86 42.39
TraesCS3B01G122600.1 Wheat plastid 43.96 42.11
TraesCS3D01G106500.1 Wheat plastid 43.96 42.11
TraesCS3A01G104300.1 Wheat plastid 43.41 41.36
Os05t0200280-01 Rice plasma membrane 43.41 40.93
TraesCS1B01G143000.1 Wheat plastid 42.31 40.1
Os01t0196500-01 Rice plastid 43.96 39.8
TraesCS1D01G130300.1 Wheat plastid 41.76 39.79
TraesCS1A01G124100.1 Wheat plastid 41.76 39.79
Bra021502.1-P Field mustard plastid 45.05 38.32
Bra021503.1-P Field mustard plastid 42.31 37.02
Bra018602.1-P Field mustard plastid 41.21 36.06
HORVU1Hr1G028520.1 Barley plastid 42.31 35.65
OQU77594 Sorghum plastid 37.91 35.2
Zm00001d037747_P001 Maize plastid 35.71 34.57
Bra007216.1-P Field mustard plastid 37.91 33.99
Bra003228.1-P Field mustard plastid 37.91 32.7
Bra011125.1-P Field mustard mitochondrion 30.77 32.0
HORVU3Hr1G018940.2 Barley plastid 44.51 31.76
Bra009110.1-P Field mustard plastid 37.36 31.63
Bra017037.1-P Field mustard plastid 14.84 31.4
Bra004965.1-P Field mustard plastid 36.26 30.99
Bra005112.1-P Field mustard plastid 28.02 30.36
Bra007796.1-P Field mustard plastid 14.29 30.23
Bra000056.1-P Field mustard plastid 36.81 30.18
Bra038009.1-P Field mustard cytosol, endoplasmic reticulum, plasma membrane 30.77 30.11
Bra030561.1-P Field mustard plasma membrane 29.12 29.78
Bra005924.1-P Field mustard plastid 31.87 26.61
Bra002833.1-P Field mustard plastid 26.37 25.95
Protein Annotations
EnsemblPlants:Bra021504.1EnsemblPlants:Bra021504.1-PEnsemblPlantsGene:Bra021504GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF2PFAM:PF03208SEG:segTMHMM:TMhelix
UniParc:UPI000254472DUniProt:M4DYA8MapMan:22.8.4.3.2:::
Description
AT3G13720 (E=3e-060) PRA1.F3, PRA8 | PRA8
Coordinates
chrA01:+:24913747..24914295
Molecular Weight (calculated)
20764.6 Da
IEP (calculated)
6.890
GRAVY (calculated)
0.409
Length
182 amino acids
Sequence
(BLAST)
001: MTNYGTIPTS SHGSPVMDPD SISRAKQRIK DGLDMSRPWR QMFDIHYMRL PHGVPEAYSR IKKNLSHFQT NYAIVVLVLI FFSLIKHPTS LVVLTVLVFV
101: WIFLYFFRDE PIKVFRYQID DHTVLVCLSV ITIVLLFLTD VTLNLVGALV TGAVLVLIHA VVRKTEDLFL DEEAATAETI QD
Best Arabidopsis Sequence Match ( AT3G13720.1 )
(BLAST)
001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
Arabidopsis Description
PRA1F3PRA1 family protein F3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC6]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.