Skip to main content
crop-pal logo
Rice
Search for another protein from :
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • cytosol 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0196500-01
Os01t0254000-01
Os01t0338000-01
Os02t0556100-01
Os02t0655500-01
Os02t0655600-01
Os02t0732500-01
Os03t0100900-01
Os03t0333400-01
Os03t0666200-01
Os03t0784900-01
Os04t0450200-01
Os04t0548000-01
Os05t0128700-00
Os05t0153901-00
Os05t0200280-01
Os06t0107000-01
Os06t0225000-00
Os07t0138100-01
Os08t0143700-01
Os08t0338700-01
Os09t0266000-02
Os09t0284400-01
Os10t0456500-02
Os12t0407200-01
Os12t0407500-01
Os12t0505950-00
Os12t0560300-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G55190.1 Os09t0266000-02 AT1G71480.1 21798944
AT1G55190.1 Os03t0784900-01 AT2G34690.1 18845362
AT1G55190.1 Os06t0107000-01 AT4G25680.1 21798944
AT1G55190.1 Os02t0556100-01 AT5G10730.1 21798944
AT1G55190.1 Os02t0655600-01 AT5G51180.1 21798944
AT1G55190.1 Os08t0143700-01 AT5G51180.1 21798944
AT3G13710.1 Os01t0254000-01 AT1G09180.1 21798944
AT3G13710.1 Os01t0338000-01 AT1G09180.1 21798944
AT3G13710.1 Os06t0225000-00 AT1G09180.1 21798944
AT3G13710.1 Os12t0560300-01 AT1G09180.1 21798944
AT3G13710.1 Os10t0456500-02 AT3G53180.1 21798944
AT3G13710.1 Os01t0254000-01 AT4G02080.1 21798944
AT3G13710.1 Os01t0338000-01 AT4G02080.1 21798944
AT3G13710.1 Os06t0225000-00 AT4G02080.1 21798944
AT3G13710.1 Os12t0560300-01 AT4G02080.1 21798944
AT3G13720.1 Os03t0333400-01 AT1G03600.1 21798944
AT3G13720.1 Os01t0196500-01 AT1G55190.1 21798944
AT3G13720.1 Os05t0200280-01 AT1G55190.1 21798944
AT3G13720.1 Os09t0266000-02 AT1G71480.1 21798944
AT3G13720.1 Os03t0666200-01 AT2G30880.1 21798944
AT3G13720.1 Os05t0128700-00 AT2G30880.1 21798944
AT3G13720.1 Os05t0153901-00 AT2G30880.1 21798944
AT3G13720.1 Os07t0138100-01 AT2G30880.1 21798944
AT3G13720.1 Os12t0505950-00 AT2G30880.1 21798944
AT3G13720.1 Os03t0784900-01 AT2G34690.1 18845362
AT3G13720.1 Os01t0196500-01 AT3G13720.1 21798944
AT3G13720.1 Os05t0200280-01 AT3G13720.1 21798944
AT3G13720.1 Os12t0407200-01 AT3G50110.1 21798944
AT3G13720.1 Os12t0407500-01 AT3G50110.1 21798944
AT3G13720.1 Os02t0655500-01 AT4G17486.1 21798944
AT3G13720.1 Os03t0100900-01 AT4G17486.1 21798944
AT3G13720.1 Os04t0548000-01 AT4G17486.1 21798944
AT3G13720.1 Os06t0107000-01 AT4G25660.1 21798944
AT3G13720.1 Os06t0107000-01 AT4G25680.1 21798944
AT3G13720.1 Os04t0450200-01 AT5G09450.1 21798944
AT3G13720.1 Os02t0732500-01 AT5G37680.1 21798944
AT3G13720.1 Os02t0655500-01 AT5G47310.1 21798944
AT3G13720.1 Os03t0100900-01 AT5G47310.1 21798944
AT3G13720.1 Os04t0548000-01 AT5G47310.1 21798944
AT3G13720.1 Os08t0338700-01 AT5G55200.1 21798944
AT3G13720.1 Os09t0284400-01 AT5G55200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G122600.1 Wheat plastid 81.09 85.79
TraesCS3D01G106500.1 Wheat plastid 81.09 85.79
TraesCS3A01G104300.1 Wheat plastid 81.09 85.34
Zm00001d039455_P002 Maize extracellular, mitochondrion 79.1 82.38
EES00126 Sorghum plastid 78.11 81.77
Os05t0200280-01 Rice plasma membrane 68.66 71.5
HORVU3Hr1G018940.2 Barley plastid 81.59 64.31
GSMUA_Achr7P09070_001 Banana plastid 58.71 62.77
KRH23330 Soybean plastid 50.25 54.89
KRH10001 Soybean mitochondrion 49.25 53.8
VIT_09s0002g02400.t01 Wine grape plastid 49.75 51.81
Solyc03g121460.1.1 Tomato plastid 45.77 50.55
PGSC0003DMT400006409 Potato plasma membrane 45.77 50.55
AT3G13720.1 Thale cress cytosol, plasma membrane, plastid 45.77 48.94
KRH44167 Soybean plasma membrane 42.79 48.86
CDX97509 Canola plasma membrane 43.78 48.62
KRH47141 Soybean plasma membrane 42.79 48.31
Bra027406.1-P Field mustard plasma membrane 43.28 48.07
CDY23634 Canola plasma membrane 43.28 48.07
AT1G55190.1 Thale cress plasma membrane 42.79 45.5
AT3G13710.1 Thale cress plasma membrane 41.29 44.15
CDY51735 Canola plasma membrane 39.8 43.96
Bra021504.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 39.8 43.96
CDY26125 Canola cytosol, plasma membrane, plastid 41.29 43.92
VIT_11s0016g02330.t01 Wine grape plastid 41.29 43.92
CDY37483 Canola plasma membrane 39.3 43.41
CDY33064 Canola cytosol, plasma membrane, plastid 40.3 43.32
Bra014355.1-P Field mustard cytosol, plasma membrane, plastid 40.3 42.86
CDY08228 Canola plasma membrane 40.3 42.86
CDY24050 Canola cytosol, plasma membrane, plastid 39.8 42.78
Bra037983.1-P Field mustard extracellular, plasma membrane 29.35 42.14
Bra031001.1-P Field mustard plasma membrane 36.82 40.88
AT1G17700.1 Thale cress plasma membrane 36.32 40.56
CDX81845 Canola plasma membrane 36.32 40.33
CDY26225 Canola plasma membrane 35.82 39.13
Bra025954.1-P Field mustard plasma membrane 35.32 38.59
CDY59501 Canola plasma membrane 33.83 36.96
KRH49060 Soybean plasma membrane 35.32 35.86
KRH74153 Soybean endoplasmic reticulum, peroxisome, plasma membrane 34.83 35.0
CDY06788 Canola plastid 32.84 34.02
AT4G29658.2 Thale cress plastid 30.85 32.63
CDY43514 Canola mitochondrion 27.86 32.0
Bra011125.1-P Field mustard mitochondrion 27.86 32.0
Os01t0827400-01 Rice extracellular, mitochondrion, plasma membrane 22.89 31.72
Os03t0798400-01 Rice plasma membrane 35.32 30.87
Os11t0107600-01 Rice plastid 32.84 30.0
Os05t0474400-01 Rice plasma membrane, vacuole 32.84 30.0
Os12t0107600-00 Rice plastid 32.34 29.55
CDY37482 Canola plastid 29.35 28.23
Bra021503.1-P Field mustard plastid 28.86 27.88
CDY51734 Canola plastid 28.86 27.75
CDY55133 Canola plasma membrane 25.87 24.41
Bra021502.1-P Field mustard plastid 25.37 23.83
CDY51733 Canola plastid 25.37 23.83
Os03t0741600-00 Rice nucleus 37.31 22.06
Protein Annotations
EMBL:AK243372EnsemblPlants:Os01t0196500-01EnsemblPlantsGene:Os01g0196500EntrezGene:4327326GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF10PFAM:PF03208ProteinID:BAF04208.2
ProteinID:BAS70865.1ProteinID:EEE54048.1RefSeq:XP_015623174.1RefSeq:XP_015623181.1SEG:segTMHMM:TMhelix
UniParc:UPI000188B05CUniProt:B7FAB9MapMan:22.8.4.3.2:::
Description
Prenylated rab acceptor PRA1 family protein. (Os01t0196500-01)
Coordinates
chr1:-:5213979..5216701
Molecular Weight (calculated)
21179.0 Da
IEP (calculated)
8.472
GRAVY (calculated)
0.636
Length
201 amino acids
Sequence
(BLAST)
001: MSKYGTIPTS SSSSSSGAAP PPLPLGGGGG ASPLDFFSRA KARGATALAT RRPWRELADP HALGLPPSLA DAYLRVRANL AHYAMNYAIV VLAVVFLSLL
101: WHPASLIVFL VCMVAWLVLY FLRDEPIVLF GRVVGDGAVL AALAAVTLVL LLLTGATANI VSSLLIGVLL VVLHAALHKA EENVDDEVGR WYTPVPPQPA
201: H
Best Arabidopsis Sequence Match ( AT3G13720.1 )
(BLAST)
001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
Arabidopsis Description
PRA1F3PRA1 family protein F3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC6]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.