Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
19621931
plastid: 21433289 plasma membrane: 27800704 extracellular: 28232208 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
21433289
doi
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0708400-01 | |
| Os10t0476600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03600.1 | Os02t0708400-01 | AT3G27960.1 | 21798944 |
| AT1G03600.1 | Os10t0476600-01 | AT5G28900.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89880 | Canola | cytosol | 41.82 | 82.14 |
| Zm00001d029049_P001 | Maize | plastid | 67.88 | 65.88 |
| EER94911 | Sorghum | plastid | 67.88 | 65.12 |
| KRH22415 | Soybean | nucleus | 61.21 | 59.76 |
| TraesCS4D01G172800.1 | Wheat | plastid | 61.82 | 59.65 |
| TraesCS4B01G170800.1 | Wheat | plastid | 60.61 | 59.52 |
| GSMUA_Achr2P00450_001 | Banana | plastid | 61.82 | 59.3 |
| TraesCS4A01G134100.1 | Wheat | plastid | 61.82 | 59.3 |
| KRH26922 | Soybean | nucleus | 60.61 | 57.8 |
| GSMUA_Achr1P08890_001 | Banana | plastid | 60.61 | 55.25 |
| PGSC0003DMT400047280 | Potato | extracellular, plastid | 55.15 | 54.17 |
| CDY72088 | Canola | plastid | 56.97 | 53.71 |
| CDY70668 | Canola | plastid | 56.36 | 53.14 |
| Bra030537.1-P | Field mustard | plastid | 55.15 | 52.91 |
| CDY51388 | Canola | plastid | 55.76 | 52.87 |
| CDY15467 | Canola | plastid | 55.15 | 52.6 |
| Bra033412.1-P | Field mustard | plastid | 55.76 | 52.57 |
| VIT_12s0059g01810.t01 | Wine grape | mitochondrion, plastid | 64.24 | 51.21 |
| AT1G03600.1 | Thale cress | plastid | 53.33 | 50.57 |
| Solyc07g054290.1.1 | Tomato | plastid | 55.76 | 46.7 |
Protein Annotations
| MapMan:1.1.1.3.8 | Gene3D:1.20.58.810 | EntrezGene:4332745 | ProteinID:ABF95786.1 | ProteinID:BAF11938.1 | ProteinID:BAS84055.1 |
| ProteinID:EAZ26816.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009543 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010206 | GO:GO:0010207 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0071484 | InterPro:IPR038450 |
| HAMAP:MF_01481 | EnsemblPlantsGene:Os03g0333400 | EnsemblPlants:Os03t0333400-01 | PFAM:PF13326 | InterPro:PSII_Pbs27 | InterPro:PSII_Pbs27_sf |
| PANTHER:PTHR34041 | PANTHER:PTHR34041:SF1 | UniProt:Q10LV7 | UniParc:UPI0000DB4221 | RefSeq:XP_015632772.1 | SEG:seg |
Description
Similar to photosystem II 11 kD protein. (Os03t0333400-01)
Coordinates
chr3:+:12320931..12321796
Molecular Weight (calculated)
17654.2 Da
IEP (calculated)
10.441
GRAVY (calculated)
-0.217
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPASSPVPA VLTAPATAAT AAIAVKPTPP QRALQASRRE LVVAAAAVAL WPCGGAARAA SDDEYVSETK DVIGKVRSTI NMDRADPGVA DAVAELRELS
101: NSWVAKYRRE KSLLGRPSFR EMYSALNAVS GHYISFGPTA PIPNKRRARI LEEMDTAEKA LLRGR
101: NSWVAKYRRE KSLLGRPSFR EMYSALNAVS GHYISFGPTA PIPNKRRARI LEEMDTAEKA LLRGR
001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR
Arabidopsis Description
PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.