CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDY00020
CDY57012
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03600.1	CDX86457	AT3G27960.1	21798944
AT1G03600.1	CDY58518	AT3G27960.1	21798944
AT1G03600.1	CDY00020	AT5G28900.1	21798944
AT1G03600.1	CDY57012	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51388	Canola	plastid	97.11	96.55
Bra030537.1-P	Field mustard	plastid	95.38	95.93
CDX89880	Canola	cytosol	46.24	95.24
CDY70668	Canola	plastid	87.86	86.86
CDY72088	Canola	plastid	86.71	85.71
AT1G03600.1	Thale cress	plastid	84.97	84.48
PGSC0003DMT400047280	Potato	extracellular, plastid	58.38	60.12
KRH22415	Soybean	nucleus	56.07	57.4
KRH26922	Soybean	nucleus	56.07	56.07
Os03t0333400-01	Rice	plastid	52.6	55.15
TraesCS4B01G170800.1	Wheat	plastid	53.18	54.76
Zm00001d029049_P001	Maize	plastid	53.76	54.71
EER94911	Sorghum	plastid	53.76	54.07
Zm00001d047532_P001	Maize	plastid	52.02	53.89
TraesCS4D01G172800.1	Wheat	plastid	52.02	52.63
GSMUA_Achr1P08890_001	Banana	plastid	54.91	52.49
TraesCS4A01G134100.1	Wheat	plastid	52.02	52.33
Solyc07g054290.1.1	Tomato	plastid	58.96	51.78
GSMUA_Achr2P00450_001	Banana	plastid	51.45	51.74
VIT_12s0059g01810.t01	Wine grape	mitochondrion, plastid	56.07	46.86

Protein Annotations

MapMan:1.1.1.3.8	Gene3D:1.20.58.810	GO:A0A078FRI5	UniProt:A0A078FRI5	EnsemblPlants:CDY15467	ProteinID:CDY15467
ProteinID:CDY15467.1	ncoils:Coil	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010207	GO:GO:0015979	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00089635001	InterPro:IPR038450	HAMAP:MF_01481
PFAM:PF13326	InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf	PANTHER:PTHR34041	PANTHER:PTHR34041:SF1	UniParc:UPI0004EE735E
SEG:seg	:	:	:	:	:

Description

BnaA08g27510DBnaA08g27510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRI5]

Coordinates

chrLK032055:+:141868..142515

Molecular Weight (calculated)

18773.5 Da

IEP (calculated)

10.415

GRAVY (calculated)

-0.315

Length

173 amino acids

Sequence
(BLAST)

001: MASASPTATL LKPNPPPPHK PTIITASVSP PRRHTLPRRD FLSLTAASTL FLTQSIIPFV APSPASAAED EEYVKDTSAV ISKVRTTLSM ERTDPNVADT
101: VAELREASNS WVAKYRKEKA LLGKASFRDM YAALNAVSGH YVSFGPTAPI PAKRKARILE EMETAEKALS RGR

Best Arabidopsis Sequence Match ( AT1G03600.1 )
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Arabidopsis Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.