Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03600.1 | CDX86457 | AT3G27960.1 | 21798944 |
| AT1G03600.1 | CDY58518 | AT3G27960.1 | 21798944 |
| AT1G03600.1 | CDY00020 | AT5G28900.1 | 21798944 |
| AT1G03600.1 | CDY57012 | AT5G28900.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70668 | Canola | plastid | 100.0 | 48.0 |
| CDY72088 | Canola | plastid | 100.0 | 48.0 |
| CDY15467 | Canola | plastid | 95.24 | 46.24 |
| CDY51388 | Canola | plastid | 95.24 | 45.98 |
| AT1G03600.1 | Thale cress | plastid | 95.24 | 45.98 |
| KRH22415 | Soybean | nucleus | 85.71 | 42.6 |
| PGSC0003DMT400047280 | Potato | extracellular, plastid | 84.52 | 42.26 |
| Os03t0333400-01 | Rice | plastid | 82.14 | 41.82 |
| KRH26922 | Soybean | nucleus | 83.33 | 40.46 |
| Zm00001d047532_P001 | Maize | plastid | 79.76 | 40.12 |
| Zm00001d029049_P001 | Maize | plastid | 80.95 | 40.0 |
| GSMUA_Achr2P00450_001 | Banana | plastid | 80.95 | 39.53 |
| EER94911 | Sorghum | plastid | 80.95 | 39.53 |
| TraesCS4B01G170800.1 | Wheat | plastid | 78.57 | 39.29 |
| TraesCS4D01G172800.1 | Wheat | plastid | 78.57 | 38.6 |
| TraesCS4A01G134100.1 | Wheat | plastid | 78.57 | 38.37 |
| GSMUA_Achr1P08890_001 | Banana | plastid | 82.14 | 38.12 |
| Solyc07g054290.1.1 | Tomato | plastid | 84.52 | 36.04 |
| VIT_12s0059g01810.t01 | Wine grape | mitochondrion, plastid | 83.33 | 33.82 |
Protein Annotations
| EnsemblPlants:CDX89880 | EnsemblPlantsGene:GSBRNA2T00150356001 | Gene3D:1.20.58.810 | GO:A0A078DL01 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010207 | GO:GO:0015979 | GO:GO:0016043 | HAMAP:MF_01481 |
| InterPro:IPR038450 | InterPro:PSII_Pbs27 | InterPro:PSII_Pbs27_sf | PANTHER:PTHR34041 | PANTHER:PTHR34041:SF1 | PFAM:PF13326 |
| ProteinID:CDX89880 | ProteinID:CDX89880.1 | UniParc:UPI0003D44660 | MapMan:1.1.1.3.8 | : | : |
Description
BnaA10g02020D
Coordinates
chrLK031861:-:582317..582571
Molecular Weight (calculated)
9322.1 Da
IEP (calculated)
10.179
GRAVY (calculated)
-0.496
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MERTDPNVAD AVAELREVSN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL SRGR
001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR
Arabidopsis Description
PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.