Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
20089766
plastid: 22065420 plastid: 23198870 |
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d014037_P004 | |
| Zm00001d017793_P001 | |
| Zm00001d032708_P009 | |
| Zm00001d051589_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89880 | Canola | cytosol | 40.12 | 79.76 |
| Zm00001d029049_P001 | Maize | plastid | 67.66 | 66.47 |
| KRH22415 | Soybean | nucleus | 58.68 | 57.99 |
| KRH26922 | Soybean | nucleus | 58.08 | 56.07 |
| GSMUA_Achr2P00450_001 | Banana | plastid | 57.48 | 55.81 |
| GSMUA_Achr1P08890_001 | Banana | plastid | 59.88 | 55.25 |
| PGSC0003DMT400047280 | Potato | extracellular, plastid | 55.09 | 54.76 |
| CDY72088 | Canola | plastid | 55.69 | 53.14 |
| AT1G03600.1 | Thale cress | plastid | 55.09 | 52.87 |
| Bra033412.1-P | Field mustard | plastid | 55.09 | 52.57 |
| CDY70668 | Canola | plastid | 55.09 | 52.57 |
| Bra030537.1-P | Field mustard | plastid | 53.89 | 52.33 |
| CDY15467 | Canola | plastid | 53.89 | 52.02 |
| CDY51388 | Canola | plastid | 53.89 | 51.72 |
| VIT_12s0059g01810.t01 | Wine grape | mitochondrion, plastid | 60.48 | 48.79 |
| Solyc07g054290.1.1 | Tomato | plastid | 55.09 | 46.7 |
Protein Annotations
| MapMan:1.1.1.3.8 | Gene3D:1.20.58.810 | EntrezGene:100281235 | ProteinID:AQL06861.1 | UniProt:B4FRJ4 | EMBL:BT039732 |
| EMBL:EU956036 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010207 |
| GO:GO:0015979 | GO:GO:0016043 | InterPro:IPR006311 | InterPro:IPR038450 | HAMAP:MF_01481 | PFAM:PF13326 |
| PFscan:PS51318 | InterPro:PSII_Pbs27 | InterPro:PSII_Pbs27_sf | PANTHER:PTHR34041 | PANTHER:PTHR34041:SF1 | InterPro:TAT_signal |
| UniParc:UPI00017B74DC | EnsemblPlantsGene:Zm00001d047532 | EnsemblPlants:Zm00001d047532_P001 | EnsemblPlants:Zm00001d047532_T001 | SEG:seg | : |
Description
Photosystem II repair protein PSB27-H1 chloroplastic
Coordinates
chr9:-:134019944..134020447
Molecular Weight (calculated)
17359.8 Da
IEP (calculated)
10.550
GRAVY (calculated)
-0.141
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MRATSSPVPA AVLVAPSSAA VAVKPRAAAS GGGGSTAGRR DVLAAGTGLG AALLLALGPA RAADEEYVSE TKEVIGKVRS TIGLDKSDPS VADAVAELRD
101: LSNSWVAKYR REKSLLGRPS FREMYSALNA VSGHYISFGP TAPIPAKRRA RILEEMDTAE KALQRGR
101: LSNSWVAKYR REKSLLGRPS FREMYSALNA VSGHYISFGP TAPIPAKRRA RILEEMDTAE KALQRGR
001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR
Arabidopsis Description
PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.