Factsheet for Bra030537.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025315.1-P
Bra036126.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03600.1	Bra025315.1-P	AT3G27960.1	21798944
AT1G03600.1	Bra036126.1-P	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15467	Canola	plastid	95.93	95.38
CDY51388	Canola	plastid	95.93	94.83
Bra033412.1-P	Field mustard	plastid	87.79	86.29
AT1G03600.1	Thale cress	plastid	86.63	85.63
PGSC0003DMT400047280	Potato	extracellular, plastid	58.72	60.12
KRH22415	Soybean	nucleus	56.4	57.4
KRH26922	Soybean	nucleus	56.4	56.07
Zm00001d029049_P001	Maize	plastid	55.23	55.88
Os03t0333400-01	Rice	plastid	52.91	55.15
TraesCS4B01G170800.1	Wheat	plastid	52.91	54.17
Zm00001d047532_P001	Maize	plastid	52.33	53.89
EER94911	Sorghum	plastid	53.49	53.49
TraesCS4D01G172800.1	Wheat	plastid	52.33	52.63
GSMUA_Achr1P08890_001	Banana	plastid	55.23	52.49
TraesCS4A01G134100.1	Wheat	plastid	52.33	52.33
Solyc07g054290.1.1	Tomato	plastid	59.3	51.78
GSMUA_Achr2P00450_001	Banana	plastid	51.16	51.16
VIT_12s0059g01810.t01	Wine grape	mitochondrion, plastid	56.98	47.34

Protein Annotations

EnsemblPlants:Bra030537.1	EnsemblPlants:Bra030537.1-P	EnsemblPlantsGene:Bra030537	Gene3D:1.20.58.810	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043	HAMAP:MF_01481
InterPro:IPR038450	InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf	PANTHER:PTHR34041	PANTHER:PTHR34041:SF1	PFAM:PF13326
SEG:seg	UniParc:UPI0002545A92	UniProt:M4EP17	MapMan:1.1.1.3.8	:	:

Description

AT1G03600 (E=9e-060) | photosystem II family protein

Coordinates

chrA08:-:21423920..21424438

Molecular Weight (calculated)

18618.3 Da

IEP (calculated)

10.278

GRAVY (calculated)

-0.295

Length

172 amino acids

Sequence
(BLAST)

001: MASASATATL LKPNPPPPHK PTVITASVSP PLRHTLPRRD FLSLTAASTL LLTQSIQFIA PSPASAAEDE EYVKDTSAVI SKVRTTLSME RTDPNVADTV
101: AELREASNSW VAKYRKEKAL LGKTSFRDMY AALNAVSGHY VSFGPTAPIP AKRKARILEE METAEKALSR GR

Best Arabidopsis Sequence Match ( AT1G03600.1 )
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Arabidopsis Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.