Factsheet for TraesCS4B01G170800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G153900.1
TraesCS1B01G171200.1
TraesCS1D01G152300.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03600.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G03600.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G03600.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G03600.1	TraesCS1A01G153900.1	AT5G28900.1	21798944
AT1G03600.1	TraesCS1B01G171200.1	AT5G28900.1	21798944
AT1G03600.1	TraesCS1D01G152300.1	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G172800.1	Wheat	plastid	91.07	89.47
TraesCS4A01G134100.1	Wheat	plastid	88.69	86.63
CDX89880	Canola	cytosol	39.29	78.57
EER94911	Sorghum	plastid	62.5	61.05
Os03t0333400-01	Rice	plastid	59.52	60.61
Zm00001d029049_P001	Maize	plastid	61.31	60.59
KRH22415	Soybean	nucleus	60.12	59.76
KRH26922	Soybean	nucleus	60.71	58.96
GSMUA_Achr2P00450_001	Banana	plastid	58.33	56.98
PGSC0003DMT400047280	Potato	extracellular, plastid	54.17	54.17
AT1G03600.1	Thale cress	plastid	55.36	53.45
CDY15467	Canola	plastid	54.76	53.18
Bra030537.1-P	Field mustard	plastid	54.17	52.91
CDY51388	Canola	plastid	54.76	52.87
CDY72088	Canola	plastid	54.76	52.57
CDY70668	Canola	plastid	54.17	52.0
Bra033412.1-P	Field mustard	plastid	54.17	52.0
GSMUA_Achr1P08890_001	Banana	plastid	54.76	50.83
VIT_12s0059g01810.t01	Wine grape	mitochondrion, plastid	58.33	47.34
Solyc07g054290.1.1	Tomato	plastid	53.57	45.69

Protein Annotations

EnsemblPlants:TraesCS4B01G170800.1	EnsemblPlantsGene:TraesCS4B01G170800	Gene3D:1.20.58.810	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043	HAMAP:MF_01481	InterPro:IPR038450
InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf	PANTHER:PTHR34041	PANTHER:PTHR34041:SF1	PFAM:PF13326	SEG:seg
MapMan:1.1.1.3.8	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:373994087..373994593

Molecular Weight (calculated)

18227.0 Da

IEP (calculated)

10.778

GRAVY (calculated)

-0.287

Length

168 amino acids

Sequence
(BLAST)

001: MRSPVPAMLT APSAAAAVAK PLPVARSNTT AALHATASSR RDVMTGVGAA LLLALSPQRA RAASDDEYLT ETTEVIGKVR STISMDKTDP KVADAVTELR
101: EMSNSWVAKY RREKALLGRQ SFRDMYSALN AVSGHYISFG PTAPIPNKRR IRILEEMDAV EKSLKRGR

Best Arabidopsis Sequence Match ( AT1G03600.1 )
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Arabidopsis Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.