Factsheet for TraesCS4D01G172800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G153900.1
TraesCS1B01G171200.1
TraesCS1D01G152300.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03600.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G03600.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G03600.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G03600.1	TraesCS1A01G153900.1	AT5G28900.1	21798944
AT1G03600.1	TraesCS1B01G171200.1	AT5G28900.1	21798944
AT1G03600.1	TraesCS1D01G152300.1	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G134100.1	Wheat	plastid	97.08	96.51
TraesCS4B01G170800.1	Wheat	plastid	89.47	91.07
CDX89880	Canola	cytosol	38.6	78.57
Zm00001d029049_P001	Maize	plastid	64.91	65.29
EER94911	Sorghum	plastid	63.74	63.37
Os03t0333400-01	Rice	plastid	59.65	61.82
KRH22415	Soybean	nucleus	57.31	57.99
GSMUA_Achr2P00450_001	Banana	plastid	57.31	56.98
KRH26922	Soybean	nucleus	57.31	56.65
PGSC0003DMT400047280	Potato	extracellular, plastid	52.63	53.57
AT1G03600.1	Thale cress	plastid	53.8	52.87
Bra030537.1-P	Field mustard	plastid	52.63	52.33
CDY15467	Canola	plastid	52.63	52.02
CDY51388	Canola	plastid	52.63	51.72
CDY72088	Canola	plastid	52.63	51.43
Bra033412.1-P	Field mustard	plastid	52.63	51.43
CDY70668	Canola	plastid	52.05	50.86
GSMUA_Achr1P08890_001	Banana	plastid	53.8	50.83
VIT_12s0059g01810.t01	Wine grape	mitochondrion, plastid	56.73	46.86
Solyc07g054290.1.1	Tomato	plastid	52.63	45.69

Protein Annotations

MapMan:1.1.1.3.8	Gene3D:1.20.58.810	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010207	GO:GO:0015979	GO:GO:0016043	InterPro:IPR006311	InterPro:IPR038450	HAMAP:MF_01481
PFAM:PF13326	PFscan:PS51318	InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf	PANTHER:PTHR34041	PANTHER:PTHR34041:SF1
InterPro:TAT_signal	InterPro:TAT_signal_bac_arc	TIGRFAMs:TIGR01409	EnsemblPlantsGene:TraesCS4D01G172800	EnsemblPlants:TraesCS4D01G172800.1	SEG:seg

Description

No Description!

Coordinates

chr4D:-:300787440..300787955

Molecular Weight (calculated)

18509.3 Da

IEP (calculated)

10.778

GRAVY (calculated)

-0.278

Length

171 amino acids

Sequence
(BLAST)

001: MRSPVPAMLT APSAAAAVAK PLPAARSNTT AALHATAASS RRDVITGTGV GAALLLALWP QRARAASDDE YLTETTEVIG KVRSTISMDK TDPKVADAVT
101: ELREMSNSWV AKYRREKALL GRQSFRDMYS ALNAVSGHYI SFGPTAPIPN KRRIRILEEM DAVEKSLKRG R

Best Arabidopsis Sequence Match ( AT1G03600.1 )
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Arabidopsis Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.