CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92626
KRG93305
KRG97048
KRG97049
KRH34156
KRH56614
KRH68797

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03600.1	KRG93305	AT3G27960.1	21798944
AT1G03600.1	KRH56614	AT3G27960.1	21798944
AT1G03600.1	KRG92626	AT5G28900.1	21798944
AT1G03600.1	KRG97048	AT5G28900.1	21798944
AT1G03600.1	KRG97049	AT5G28900.1	21798944
AT1G03600.1	KRH34156	AT5G28900.1	21798944
AT1G03600.1	KRH68797	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22415	Soybean	nucleus	86.13	88.17
CDX89880	Canola	cytosol	40.46	83.33
PGSC0003DMT400047280	Potato	extracellular, plastid	63.58	65.48
GSMUA_Achr1P08890_001	Banana	plastid	64.16	61.33
TraesCS4B01G170800.1	Wheat	plastid	58.96	60.71
Os03t0333400-01	Rice	plastid	57.8	60.61
Zm00001d029049_P001	Maize	plastid	58.38	59.41
GSMUA_Achr2P00450_001	Banana	plastid	58.96	59.3
Zm00001d047532_P001	Maize	plastid	56.07	58.08
TraesCS4A01G134100.1	Wheat	plastid	57.23	57.56
TraesCS4D01G172800.1	Wheat	plastid	56.65	57.31
VIT_12s0059g01810.t01	Wine grape	mitochondrion, plastid	68.21	57.0
Bra030537.1-P	Field mustard	plastid	56.07	56.4
CDY15467	Canola	plastid	56.07	56.07
Solyc07g054290.1.1	Tomato	plastid	63.58	55.84
EER94911	Sorghum	plastid	55.49	55.81
AT1G03600.1	Thale cress	plastid	56.07	55.75
CDY51388	Canola	plastid	55.49	55.17
CDY72088	Canola	plastid	55.49	54.86
CDY70668	Canola	plastid	55.49	54.86
Bra033412.1-P	Field mustard	plastid	54.91	54.29

Protein Annotations

MapMan:1.1.1.3.8	Gene3D:1.20.58.810	EntrezGene:100777979	EMBL:ACUP02007759	EnsemblPlantsGene:GLYMA_12G202500	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009536	GO:GO:0009543	GO:GO:0009579	GO:GO:0009987	GO:GO:0010207	GO:GO:0015979
GO:GO:0016043	UniProt:I1LUF0	InterPro:IPR038450	EnsemblPlants:KRH26922	ProteinID:KRH26922	ProteinID:KRH26922.1
HAMAP:MF_01481	PFAM:PF13326	InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf	PANTHER:PTHR34041	PANTHER:PTHR34041:SF1
UniParc:UPI000233C450	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:36301835..36304669

Molecular Weight (calculated)

19007.9 Da

IEP (calculated)

10.543

GRAVY (calculated)

-0.286

Length

173 amino acids

Sequence
(BLAST)

001: MASPTLITPK SVKSLTPIKP KPTTTIAATL TPPTTTSTAA ATHPRRREFL SIITATTWLV PLSPALASSD EEYMKETEEV INKVRTTIVM DKNDPNVATA
101: VAELRETSNS WVAKYRREKA LLGRVSFRDM YSALNAVSGH YISFGPTAPI PAKRRARILE EVDTAEKALL RGR

Best Arabidopsis Sequence Match ( AT1G03600.1 )
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Arabidopsis Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.