Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89880 | Canola | cytosol | 38.12 | 82.14 |
| KRH22415 | Soybean | nucleus | 61.33 | 65.68 |
| KRH26922 | Soybean | nucleus | 61.33 | 64.16 |
| GSMUA_Achr2P00450_001 | Banana | plastid | 59.12 | 62.21 |
| Os03t0333400-01 | Rice | plastid | 55.25 | 60.61 |
| Zm00001d047532_P001 | Maize | plastid | 55.25 | 59.88 |
| PGSC0003DMT400047280 | Potato | extracellular, plastid | 54.7 | 58.93 |
| Zm00001d029049_P001 | Maize | plastid | 54.14 | 57.65 |
| CDY72088 | Canola | plastid | 55.25 | 57.14 |
| CDY70668 | Canola | plastid | 54.14 | 56.0 |
| AT1G03600.1 | Thale cress | plastid | 53.59 | 55.75 |
| EER94911 | Sorghum | plastid | 52.49 | 55.23 |
| Bra030537.1-P | Field mustard | plastid | 52.49 | 55.23 |
| CDY51388 | Canola | plastid | 53.04 | 55.17 |
| CDY15467 | Canola | plastid | 52.49 | 54.91 |
| Bra033412.1-P | Field mustard | plastid | 53.04 | 54.86 |
| TraesCS4B01G170800.1 | Wheat | plastid | 50.83 | 54.76 |
| VIT_12s0059g01810.t01 | Wine grape | mitochondrion, plastid | 62.43 | 54.59 |
| TraesCS4D01G172800.1 | Wheat | plastid | 50.83 | 53.8 |
| TraesCS4A01G134100.1 | Wheat | plastid | 50.28 | 52.91 |
| Solyc07g054290.1.1 | Tomato | plastid | 54.7 | 50.25 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P08890_001 | EnsemblPlants:GSMUA_Achr1T08890_001 | EnsemblPlantsGene:GSMUA_Achr1G08890_001 | Gene3D:1.20.58.810 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010207 | GO:GO:0015979 | GO:GO:0016043 | HAMAP:MF_01481 |
| InterPro:IPR038450 | InterPro:PSII_Pbs27 | InterPro:PSII_Pbs27_sf | PANTHER:PTHR34041 | PANTHER:PTHR34041:SF1 | PFAM:PF13326 |
| SEG:seg | UniParc:UPI000295451C | UniProt:M0RY98 | MapMan:1.1.1.3.8 | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G08890_001]
Coordinates
chr1:+:6797143..6797688
Molecular Weight (calculated)
19133.0 Da
IEP (calculated)
10.501
GRAVY (calculated)
-0.119
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MACSSLLTAP TSKPTPPLAT LSSRPVASSS LSPPTATSGA SPGGSRAMTG RRELALALST SATLLLLPAA PPALATSDEE YVRETAEVIN KVRTTVGMDK
101: KDPNVAVAVA ELREASNTWV AKYRREKALL VRVSFRDMYS ALNAVSGHYI SFGPTAPIPA KRKARILEEV DTAEKALLRG R
101: KDPNVAVAVA ELREASNTWV AKYRREKALL VRVSFRDMYS ALNAVSGHYI SFGPTAPIPA KRKARILEEV DTAEKALLRG R
001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR
Arabidopsis Description
PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.