Factsheet for VIT_12s0059g01810.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g01280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03600.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89880	Canola	cytosol	33.82	83.33
KRH22415	Soybean	nucleus	58.45	71.6
KRH26922	Soybean	nucleus	57.0	68.21
PGSC0003DMT400047280	Potato	extracellular, plastid	53.62	66.07
Os03t0333400-01	Rice	plastid	51.21	64.24
GSMUA_Achr2P00450_001	Banana	plastid	52.66	63.37
GSMUA_Achr1P08890_001	Banana	plastid	54.59	62.43
Zm00001d047532_P001	Maize	plastid	48.79	60.48
Zm00001d029049_P001	Maize	plastid	49.28	60.0
Solyc07g054290.1.1	Tomato	plastid	56.04	58.88
TraesCS4B01G170800.1	Wheat	plastid	47.34	58.33
CDY72088	Canola	plastid	49.28	58.29
CDY70668	Canola	plastid	48.79	57.71
TraesCS4A01G134100.1	Wheat	plastid	47.83	57.56
Bra030537.1-P	Field mustard	plastid	47.34	56.98
AT1G03600.1	Thale cress	plastid	47.83	56.9
TraesCS4D01G172800.1	Wheat	plastid	46.86	56.73
Bra033412.1-P	Field mustard	plastid	47.83	56.57
EER94911	Sorghum	plastid	46.86	56.4
CDY51388	Canola	plastid	47.34	56.32
CDY15467	Canola	plastid	46.86	56.07

Protein Annotations

MapMan:1.1.1.3.8	Gene3D:1.20.58.810	EntrezGene:100263742	wikigene:100263742	ProteinID:CCB52013	ProteinID:CCB52013.1
UniProt:F6HIG7	EMBL:FN595765	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0009543	GO:GO:0009579
GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043	InterPro:IPR038450	EntrezGene:LOC100263742
wikigene:LOC100263742	HAMAP:MF_01481	PFAM:PF13326	InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf	PANTHER:PTHR34041
PANTHER:PTHR34041:SF1	TIGR:TC53972	UniParc:UPI00021092F6	ArrayExpress:VIT_12s0059g01810	EnsemblPlantsGene:VIT_12s0059g01810	EnsemblPlants:VIT_12s0059g01810.t01
RefSeq:XP_002277789	RefSeq:XP_002277789.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:6668607..6684305

Molecular Weight (calculated)

22655.5 Da

IEP (calculated)

10.846

GRAVY (calculated)

-0.312

Length

207 amino acids

Sequence
(BLAST)

001: MVARRPAHVA INQPSFFLTR KEKYKLSSSG LISPKSMASP TLITPTTKPK PLFLIKSKLP TTTTNAAPPP TPQPRRRELI AVTAGVLSHA LLLPVAPQAV
101: AANDEEYVKE TADVINKVRT TINMDKTDPD VATAVADLRD ASNSWVAKYR REKALLGRPS FRDMYSALNA VSGHYISFGP TAPIPAKRKA RILEEMDTAE
201: KALLRGR

Best Arabidopsis Sequence Match ( AT1G03600.1 )
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Arabidopsis Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.