Factsheet for PGSC0003DMT400047280

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03600.1	PGSC0003DMT400001405	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89880	Canola	cytosol	42.26	84.52
Solyc07g054290.1.1	Tomato	plastid	97.62	83.25
KRH22415	Soybean	nucleus	65.48	65.09
KRH26922	Soybean	nucleus	65.48	63.58
AT1G03600.1	Thale cress	plastid	62.5	60.34
Bra033412.1-P	Field mustard	plastid	61.9	59.43
CDY70668	Canola	plastid	61.31	58.86
Bra030537.1-P	Field mustard	plastid	60.12	58.72
CDY15467	Canola	plastid	60.12	58.38
CDY72088	Canola	plastid	60.71	58.29
GSMUA_Achr2P00450_001	Banana	plastid	59.52	58.14
CDY51388	Canola	plastid	59.52	57.47
Zm00001d029049_P001	Maize	plastid	57.14	56.47
Os03t0333400-01	Rice	plastid	54.17	55.15
Zm00001d047532_P001	Maize	plastid	54.76	55.09
GSMUA_Achr1P08890_001	Banana	plastid	58.93	54.7
TraesCS4B01G170800.1	Wheat	plastid	54.17	54.17
VIT_12s0059g01810.t01	Wine grape	mitochondrion, plastid	66.07	53.62
EER94911	Sorghum	plastid	54.76	53.49
TraesCS4D01G172800.1	Wheat	plastid	53.57	52.63
TraesCS4A01G134100.1	Wheat	plastid	53.57	52.33

Protein Annotations

MapMan:1.1.1.3.8	Gene3D:1.20.58.810	EntrezGene:102601299	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534
GO:GO:0009535	GO:GO:0009536	GO:GO:0009543	GO:GO:0009579	GO:GO:0009628	GO:GO:0009987
GO:GO:0010206	GO:GO:0010207	GO:GO:0015979	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538
GO:GO:0071484	InterPro:IPR038450	UniProt:M1BKG3	HAMAP:MF_01481	PFAM:PF13326	EnsemblPlantsGene:PGSC0003DMG400018360
PGSC:PGSC0003DMG400018360	EnsemblPlants:PGSC0003DMT400047280	InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf	PANTHER:PTHR34041	PANTHER:PTHR34041:SF1
UniParc:UPI0002956AE2	RefSeq:XP_006357500.1	SEG:seg	:	:	:

Description

Photosystem II 11 kDa protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018360]

Coordinates

chr7:+:48794305..48795030

Molecular Weight (calculated)

18403.1 Da

IEP (calculated)

10.364

GRAVY (calculated)

-0.239

Length

168 amino acids

Sequence
(BLAST)

001: MASPTLITPS TSTPKSLITP IRSKLISSVT TTTTALRRRE FLSLSAGILS PSLLLPATSA FAATDEEYVK EASEVIQKVR STLNMDKGDP NIADSVAELR
101: EASNYWVAKY RREKALLGRA SFRDIYSALN AVSGHYVSFG PTTPIPAKRK VRILEEMDTA EKALQRGR

Best Arabidopsis Sequence Match ( AT1G03600.1 )
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Arabidopsis Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.