CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92626
KRG93305
KRG97048
KRG97049
KRH34156
KRH56614
KRH68797

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03600.1	KRG93305	AT3G27960.1	21798944
AT1G03600.1	KRH56614	AT3G27960.1	21798944
AT1G03600.1	KRG92626	AT5G28900.1	21798944
AT1G03600.1	KRG97048	AT5G28900.1	21798944
AT1G03600.1	KRG97049	AT5G28900.1	21798944
AT1G03600.1	KRH34156	AT5G28900.1	21798944
AT1G03600.1	KRH68797	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26922	Soybean	nucleus	88.17	86.13
CDX89880	Canola	cytosol	42.6	85.71
PGSC0003DMT400047280	Potato	extracellular, plastid	65.09	65.48
GSMUA_Achr1P08890_001	Banana	plastid	65.68	61.33
Os03t0333400-01	Rice	plastid	59.76	61.21
GSMUA_Achr2P00450_001	Banana	plastid	62.13	61.05
TraesCS4B01G170800.1	Wheat	plastid	59.76	60.12
Zm00001d029049_P001	Maize	plastid	59.76	59.41
Zm00001d047532_P001	Maize	plastid	57.99	58.68
VIT_12s0059g01810.t01	Wine grape	mitochondrion, plastid	71.6	58.45
CDY72088	Canola	plastid	60.35	58.29
CDY70668	Canola	plastid	59.76	57.71
TraesCS4A01G134100.1	Wheat	plastid	58.58	57.56
TraesCS4D01G172800.1	Wheat	plastid	57.99	57.31
AT1G03600.1	Thale cress	plastid	58.58	56.9
Bra033412.1-P	Field mustard	plastid	58.58	56.57
Bra030537.1-P	Field mustard	plastid	57.4	56.4
CDY51388	Canola	plastid	57.99	56.32
CDY15467	Canola	plastid	57.4	56.07
Solyc07g054290.1.1	Tomato	plastid	65.09	55.84
EER94911	Sorghum	plastid	56.8	55.81

Protein Annotations

MapMan:1.1.1.3.8	Gene3D:1.20.58.810	EntrezGene:100787080	EMBL:ACUP02008411	EnsemblPlantsGene:GLYMA_13G299200	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009536	GO:GO:0009543	GO:GO:0009579	GO:GO:0009987	GO:GO:0010207	GO:GO:0015979
GO:GO:0016043	UniProt:I1M3V1	InterPro:IPR038450	EnsemblPlants:KRH22415	ProteinID:KRH22415	ProteinID:KRH22415.1
HAMAP:MF_01481	PFAM:PF13326	InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf	PANTHER:PTHR34041	PANTHER:PTHR34041:SF1
UniParc:UPI0001CAE395	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:39750734..39751715

Molecular Weight (calculated)

18589.4 Da

IEP (calculated)

10.543

GRAVY (calculated)

-0.292

Length

169 amino acids

Sequence
(BLAST)

001: MASPTLITPK SVKSLSPIKP KATTTTTTIA ATLTPSTTTH PRRRELLSII TTTWLLPLSP ALASSDEEYV KETEEVINKV RTTIVMDKND PNVATAVAEL
101: RETSNSWVAK YRREKALLGR ASFRDIYSAL NAVSGHYISF GPTAPIPAKR RARILEEVDT AEKALLRGR

Best Arabidopsis Sequence Match ( AT1G03600.1 )
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Arabidopsis Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.