CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDY00020
CDY57012
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03600.1	CDX86457	AT3G27960.1	21798944
AT1G03600.1	CDY58518	AT3G27960.1	21798944
AT1G03600.1	CDY00020	AT5G28900.1	21798944
AT1G03600.1	CDY57012	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15467	Canola	plastid	96.55	97.11
Bra030537.1-P	Field mustard	plastid	94.83	95.93
CDX89880	Canola	cytosol	45.98	95.24
CDY70668	Canola	plastid	89.08	88.57
CDY72088	Canola	plastid	87.36	86.86
AT1G03600.1	Thale cress	plastid	84.48	84.48
PGSC0003DMT400047280	Potato	extracellular, plastid	57.47	59.52
KRH22415	Soybean	nucleus	56.32	57.99
Os03t0333400-01	Rice	plastid	52.87	55.76
KRH26922	Soybean	nucleus	55.17	55.49
TraesCS4B01G170800.1	Wheat	plastid	52.87	54.76
Zm00001d029049_P001	Maize	plastid	53.45	54.71
EER94911	Sorghum	plastid	53.45	54.07
Zm00001d047532_P001	Maize	plastid	51.72	53.89
GSMUA_Achr1P08890_001	Banana	plastid	55.17	53.04
TraesCS4D01G172800.1	Wheat	plastid	51.72	52.63
GSMUA_Achr2P00450_001	Banana	plastid	51.72	52.33
TraesCS4A01G134100.1	Wheat	plastid	51.72	52.33
Solyc07g054290.1.1	Tomato	plastid	58.05	51.27
VIT_12s0059g01810.t01	Wine grape	mitochondrion, plastid	56.32	47.34

Protein Annotations

MapMan:1.1.1.3.8	Gene3D:1.20.58.810	GO:A0A078IQM5	UniProt:A0A078IQM5	EnsemblPlants:CDY51388	ProteinID:CDY51388
ProteinID:CDY51388.1	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010207
GO:GO:0015979	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00003315001	InterPro:IPR038450	HAMAP:MF_01481	PFAM:PF13326
InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf	PANTHER:PTHR34041	PANTHER:PTHR34041:SF1	UniParc:UPI0001CA908F	SEG:seg

Description

BnaC08g46250DBnaC08g46250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQM5]

Coordinates

chrLK032991:-:54722..55496

Molecular Weight (calculated)

18761.6 Da

IEP (calculated)

10.278

GRAVY (calculated)

-0.230

Length

174 amino acids

Sequence
(BLAST)

001: MASASPTATL LKPNPPPPPH KPTVITASVS PPLRHTLLRR DLLSLTAAST LILTQSIIPF VAPSPASAAE DEEYVKDTSA VISKVRTTLS MERTDPNVAD
101: TVAELREASN SWVAKYRKEK ALLGKASFRD MYAALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL SRGR

Best Arabidopsis Sequence Match ( AT1G03600.1 )
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Arabidopsis Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.