Factsheet for AT1G03600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89880	Canola	cytosol	45.98	95.24
Bra030537.1-P	Field mustard	plastid	85.63	86.63
Bra033412.1-P	Field mustard	plastid	86.21	85.71
CDY70668	Canola	plastid	86.21	85.71
CDY72088	Canola	plastid	86.21	85.71
CDY15467	Canola	plastid	84.48	84.97
CDY51388	Canola	plastid	84.48	84.48
PGSC0003DMT400047280	Potato	extracellular, plastid	60.34	62.5
KRH22415	Soybean	nucleus	56.9	58.58
KRH26922	Soybean	nucleus	55.75	56.07
TraesCS4B01G170800.1	Wheat	plastid	53.45	55.36
Zm00001d029049_P001	Maize	plastid	54.02	55.29
Zm00001d047532_P001	Maize	plastid	52.87	55.09
EER94911	Sorghum	plastid	53.45	54.07
TraesCS4D01G172800.1	Wheat	plastid	52.87	53.8
GSMUA_Achr1P08890_001	Banana	plastid	55.75	53.59
TraesCS4A01G134100.1	Wheat	plastid	52.87	53.49
Os03t0333400-01	Rice	plastid	50.57	53.33
Solyc07g054290.1.1	Tomato	plastid	60.34	53.3
GSMUA_Achr2P00450_001	Banana	plastid	52.3	52.91
VIT_12s0059g01810.t01	Wine grape	mitochondrion, plastid	56.9	47.83

Protein Annotations

MapMan:1.1.1.3.8	Gene3D:1.20.58.810	PDB:5X56	EntrezGene:839449	UniProt:A0A178WF34	ProteinID:AAF86516.1
ProteinID:AEE27588.1	EMBL:AF324690	EMBL:AF370539	ArrayExpress:AT1G03600	EnsemblPlantsGene:AT1G03600	RefSeq:AT1G03600
TAIR:AT1G03600	RefSeq:AT1G03600-TAIR-G	EnsemblPlants:AT1G03600.1	TAIR:AT1G03600.1	EMBL:AY044332	EMBL:AY084551
EMBL:AY114570	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009543	GO:GO:0009579	GO:GO:0009628	GO:GO:0009987	GO:GO:0010206	GO:GO:0010207
GO:GO:0015979	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538	GO:GO:0071484	InterPro:IPR038450
HAMAP:MF_01481	RefSeq:NP_563687.1	ProteinID:OAP16734.1	PFAM:PF13326	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009001	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	Symbol:PSB27
InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf	PANTHER:PTHR34041	PANTHER:PTHR34041:SF1	UniProt:Q9LR64	UniParc:UPI000005EB7B
SEG:seg	:	:	:	:	:

Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]

Coordinates

chr1:+:898480..899794

Molecular Weight (calculated)

18835.7 Da

IEP (calculated)

10.503

GRAVY (calculated)

-0.252

Length

174 amino acids

Sequence
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.