CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 6
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus, plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94083
EES05647

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03600.1	EES05647	AT3G27960.1	21798944
AT1G03600.1	EER94083	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029049_P001	Maize	plastid	87.79	88.82
CDX89880	Canola	cytosol	39.53	80.95
Os03t0333400-01	Rice	plastid	65.12	67.88
TraesCS4D01G172800.1	Wheat	plastid	63.37	63.74
TraesCS4A01G134100.1	Wheat	plastid	63.37	63.37
TraesCS4B01G170800.1	Wheat	plastid	61.05	62.5
KRH22415	Soybean	nucleus	55.81	56.8
KRH26922	Soybean	nucleus	55.81	55.49
PGSC0003DMT400047280	Potato	extracellular, plastid	53.49	54.76
GSMUA_Achr2P00450_001	Banana	plastid	54.07	54.07
CDY15467	Canola	plastid	54.07	53.76
Bra030537.1-P	Field mustard	plastid	53.49	53.49
AT1G03600.1	Thale cress	plastid	54.07	53.45
CDY51388	Canola	plastid	54.07	53.45
Bra033412.1-P	Field mustard	plastid	54.07	53.14
CDY72088	Canola	plastid	53.49	52.57
GSMUA_Achr1P08890_001	Banana	plastid	55.23	52.49
CDY70668	Canola	plastid	52.91	52.0
VIT_12s0059g01810.t01	Wine grape	mitochondrion, plastid	56.4	46.86
Solyc07g054290.1.1	Tomato	plastid	53.49	46.7

Protein Annotations

MapMan:1.1.1.3.8	Gene3D:1.20.58.810	EntrezGene:8082345	UniProt:C5X0U5	EnsemblPlants:EER94911	ProteinID:EER94911
ProteinID:EER94911.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009543	GO:GO:0009579	GO:GO:0009628	GO:GO:0009987	GO:GO:0010206	GO:GO:0010207
GO:GO:0015979	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538	GO:GO:0071484	InterPro:IPR038450
HAMAP:MF_01481	PFAM:PF13326	InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf	PANTHER:PTHR34041	PANTHER:PTHR34041:SF1
EnsemblPlantsGene:SORBI_3001G382100	unigene:Sbi.8193	UniParc:UPI0001A82DF6	RefSeq:XP_002467913.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:67001817..67002957

Molecular Weight (calculated)

17881.6 Da

IEP (calculated)

10.393

GRAVY (calculated)

-0.009

Length

172 amino acids

Sequence
(BLAST)

001: MRAASSPLPA AVLAAPSAAA ALVVKPLPRA AANGGGSTGR RDVVLAGTGL GAALVLALGP VCGAARAADD EYVSETKEVI GKVRSTISLD KSDPSVADAV
101: AELRELSNSW VAKYRREKSL LGRPSFREMY SALNAVSGHY ISFGPTAPIP AKRRARILEE MDTAEKALLR GR

Best Arabidopsis Sequence Match ( AT1G03600.1 )
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Arabidopsis Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.