Factsheet for Zm00001d029049_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014037_P004
Zm00001d017793_P001
Zm00001d032708_P009
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03600.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT1G03600.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT1G03600.1	Zm00001d014037_P004	AT5G28900.1	21798944
AT1G03600.1	Zm00001d032708_P009	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94911	Sorghum	plastid	88.82	87.79
CDX89880	Canola	cytosol	40.0	80.95
Os03t0333400-01	Rice	plastid	65.88	67.88
Zm00001d047532_P001	Maize	plastid	66.47	67.66
TraesCS4A01G134100.1	Wheat	plastid	65.88	65.12
TraesCS4D01G172800.1	Wheat	plastid	65.29	64.91
TraesCS4B01G170800.1	Wheat	plastid	60.59	61.31
KRH22415	Soybean	nucleus	59.41	59.76
KRH26922	Soybean	nucleus	59.41	58.38
PGSC0003DMT400047280	Potato	extracellular, plastid	56.47	57.14
GSMUA_Achr2P00450_001	Banana	plastid	56.47	55.81
Bra030537.1-P	Field mustard	plastid	55.88	55.23
Bra033412.1-P	Field mustard	plastid	55.88	54.29
GSMUA_Achr1P08890_001	Banana	plastid	57.65	54.14
AT1G03600.1	Thale cress	plastid	55.29	54.02
CDY15467	Canola	plastid	54.71	53.76
CDY72088	Canola	plastid	55.29	53.71
CDY51388	Canola	plastid	54.71	53.45
CDY70668	Canola	plastid	54.71	53.14
VIT_12s0059g01810.t01	Wine grape	mitochondrion, plastid	60.0	49.28
Solyc07g054290.1.1	Tomato	plastid	56.47	48.73

Protein Annotations

MapMan:1.1.1.3.8	Gene3D:1.20.58.810	EntrezGene:100282043	EMBL:BT064237	UniProt:C0P7G8	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043
InterPro:IPR006311	InterPro:IPR038450	HAMAP:MF_01481	ProteinID:ONL97731.1	PFAM:PF13326	PFscan:PS51318
InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf	PANTHER:PTHR34041	PANTHER:PTHR34041:SF1	InterPro:TAT_signal	UniParc:UPI0001948EB6
EnsemblPlantsGene:Zm00001d029049	EnsemblPlants:Zm00001d029049_P001	EnsemblPlants:Zm00001d029049_T001	SEG:seg	:	:

Description

Photosystem II repair protein PSB27-H1 chloroplastic

Coordinates

chr1:+:56106212..56106724

Molecular Weight (calculated)

17758.4 Da

IEP (calculated)

10.393

GRAVY (calculated)

-0.081

Length

170 amino acids

Sequence
(BLAST)

001: MRATSSPVAG AVLAAPSSAA AVVVKPLPRG AANGGSTGRR EVLAGTGLGA ALLLALGPVC GAARAADEEY VSETKEVIGK VRSTINLDKS DPSVADAVAE
101: LRELSNSWVA KYRREKSLLG RPSFREMYSA LNAVSGHYIS FGPTAPIPAK RRARILEEMD TAEKALLRGR

Best Arabidopsis Sequence Match ( AT1G03600.1 )
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Arabidopsis Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.