Factsheet for Solyc07g054290.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1
Solyc04g010070.2.1
Solyc05g054980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03600.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT1G03600.1	Solyc04g010070.2.1	AT5G28900.1	21798944
AT1G03600.1	Solyc05g054980.2.1	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047280	Potato	extracellular, plastid	83.25	97.62
CDX89880	Canola	cytosol	36.04	84.52
KRH22415	Soybean	nucleus	55.84	65.09
KRH26922	Soybean	nucleus	55.84	63.58
AT1G03600.1	Thale cress	plastid	53.3	60.34
Bra033412.1-P	Field mustard	plastid	52.79	59.43
Bra030537.1-P	Field mustard	plastid	51.78	59.3
CDY15467	Canola	plastid	51.78	58.96
CDY70668	Canola	plastid	52.28	58.86
CDY72088	Canola	plastid	51.78	58.29
GSMUA_Achr2P00450_001	Banana	plastid	50.76	58.14
CDY51388	Canola	plastid	51.27	58.05
Zm00001d029049_P001	Maize	plastid	48.73	56.47
VIT_12s0059g01810.t01	Wine grape	mitochondrion, plastid	58.88	56.04
Os03t0333400-01	Rice	plastid	46.7	55.76
Zm00001d047532_P001	Maize	plastid	46.7	55.09
GSMUA_Achr1P08890_001	Banana	plastid	50.25	54.7
TraesCS4B01G170800.1	Wheat	plastid	45.69	53.57
EER94911	Sorghum	plastid	46.7	53.49
TraesCS4D01G172800.1	Wheat	plastid	45.69	52.63
TraesCS4A01G134100.1	Wheat	plastid	45.69	52.33

Protein Annotations

MapMan:1.1.1.3.8	Gene3D:1.20.58.810	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009543	GO:GO:0009579	GO:GO:0009628	GO:GO:0009987	GO:GO:0010206
GO:GO:0010207	GO:GO:0015979	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538	GO:GO:0071484
InterPro:IPR038450	UniProt:K4CFX4	HAMAP:MF_01481	PFAM:PF13326	InterPro:PSII_Pbs27	InterPro:PSII_Pbs27_sf
PANTHER:PTHR34041	PANTHER:PTHR34041:SF1	EnsemblPlantsGene:Solyc07g054290.1	EnsemblPlants:Solyc07g054290.1.1	UniParc:UPI000276C404	SEG:seg

Description

Photosystem II repair protein PSB27-H1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G03600) UniProtKB/Swiss-Prot;Acc:Q9LR64]

Coordinates

chr7:-:62640921..62641514

Molecular Weight (calculated)

21764.5 Da

IEP (calculated)

10.804

GRAVY (calculated)

-0.173

Length

197 amino acids

Sequence
(BLAST)

001: MIRHVALIPL ITKTTTLSFS PNLFKKHKSM ASPTLITPST STPKSLITPI RSKLITSVTT TTITLRRREF LSLSAGILSP SLLLPATSAF AATDEEYVKE
101: ASEVIQKVRS TLNMDKGDPN IADSVAELRE ASNYWVAKYR REKALLGRAS FRDIYSALNA VSGHYVSFGP TTPIPAKRKV RILEEMDTAE KALKRGR

Best Arabidopsis Sequence Match ( AT1G03600.1 )
(BLAST)

001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR

Arabidopsis Description

PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.