Factsheet for Solyc05g054980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067920.2.1
Solyc02g088000.2.1
Solyc03g116320.2.1
Solyc03g120440.1.1
Solyc04g007890.2.1
Solyc04g008590.2.1
Solyc07g062080.2.1
Solyc08g006320.2.1
Solyc08g016750.2.1
Solyc10g007500.2.1
Solyc10g054900.1.1
Solyc10g079430.1.1
Solyc12g096350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28900.1	Solyc04g007890.2.1	AT1G14900.1	21798944
AT5G28900.1	Solyc03g120440.1.1	AT1G15570.1	21798944
AT5G28900.1	Solyc04g008590.2.1	AT1G30120.1	21798944
AT5G28900.1	Solyc08g016750.2.1	AT1G30120.1	21798944
AT5G28900.1	Solyc07g062080.2.1	AT1G53510.1	21798944
AT5G28900.1	Solyc10g007500.2.1	AT1G53510.1	21798944
AT5G28900.1	Solyc02g088000.2.1	AT3G01180.1	21798944
AT5G28900.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT5G28900.1	Solyc10g079430.1.1	AT3G60360.1	21798944
AT5G28900.1	Solyc08g006320.2.1	AT4G31550.1	21798944
AT5G28900.1	Solyc12g096350.1.1	AT4G31550.1	21798944
AT5G28900.1	Solyc10g054900.1.1	AT4G38770.1	21798944
AT5G28900.1	Solyc02g067920.2.1	AT5G14390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97049	Soybean	cytosol	54.92	87.32
GSMUA_Achr8P19010_001	Banana	cytosol	52.5	86.28
Solyc04g010070.2.1	Tomato	plastid	86.09	86.09
CDY71370	Canola	extracellular	35.99	80.83
KRH68797	Soybean	cytosol	78.11	78.4
KRH34156	Soybean	cytosol	76.99	77.28
KRG92626	Soybean	cytosol	76.99	77.28
Bra010012.1-P	Field mustard	cytosol	76.62	76.77
CDX86212	Canola	cytosol	76.62	76.77
CDY48668	Canola	cytosol	76.62	76.77
GSMUA_AchrUn_...	Banana	cytosol	77.18	76.75
GSMUA_Achr11P...	Banana	cytosol	76.81	76.53
AT5G28850.2	Thale cress	cytosol	75.14	75.56
AT5G28900.1	Thale cress	cytosol	75.14	75.56
EER94083	Sorghum	cytosol	74.95	74.68
Os10t0476600-01	Rice	cytosol, plasma membrane, plastid	74.4	74.12
CDY57012	Canola	cytosol	73.65	73.93
Bra036126.1-P	Field mustard	cytosol	73.65	73.93
Zm00001d032708_P009	Maize	cytosol	73.65	73.52
AT1G54450.1	Thale cress	cytosol	72.36	72.9
CDY00020	Canola	cytosol	73.1	72.83
Bra021340.1-P	Field mustard	cytosol	72.73	72.59
CDY44814	Canola	cytosol	72.73	72.59
TraesCS1A01G153900.1	Wheat	cytosol	72.73	72.46
HORVU1Hr1G040980.1	Barley	cytosol	72.54	72.27
TraesCS1B01G171200.1	Wheat	cytosol	72.54	72.27
TraesCS1D01G152300.1	Wheat	cytosol	72.54	72.27
Zm00001d014037_P004	Maize	cytosol	73.47	68.99
KRG97048	Soybean	nucleus	23.01	62.94
Solyc01g067500.2.1	Tomato	cytosol	19.11	21.55

Protein Annotations

EnsemblPlants:Solyc05g054980.2.1	EnsemblPlantsGene:Solyc05g054980.2	Gene3D:1.10.238.10	Gene3D:1.10.238.220	Gene3D:1.10.238.230	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR14095
PANTHER:PTHR14095:SF7	PFAM:PF13499	PFscan:PS50222	SEG:seg	SUPFAM:SSF47473	UniParc:UPI0002766E9C
UniProt:K4C2H5	MapMan:18.4.24.1.2.4	:	:	:	:

Description

No Description!

Coordinates

chr5:-:64760445..64769397

Molecular Weight (calculated)

62335.1 Da

IEP (calculated)

4.691

GRAVY (calculated)

-0.372

Length

539 amino acids

Sequence
(BLAST)

001: MDVDLIGDLA RLDAELLQLP DVSSFAIKDN PFVAQKLFDQ WLSLPDTAPL VKNLLNNAKA GGPLSATGAS SSTNVATSSS LPSMFPAGST PPLSPRSSSG
101: SPRTTRPRAG PSMLGSPLKL VNEPVKELIP QFYFQNGRPP TNELKERCLF RINQFFYGHT DGLQMDEFKP ITKEICKLPS FFSTVLFRKI DVGQTGIITR
201: DVFVDYWVNG NMLTKDIATQ IYTILKQPDL KHLIQDDFKP VLRDLLATHP GLEFLRNTPE FQERYAETVI YRIFFYVNRL GDGHLTLREL KRSDLIAAMQ
301: HADEEEDINK VLRYFSYEHF YVIYCKFWEL DTDHDFLIDK ENLIRYGNHA LTYRIVDRIF SQVPRKFTSK VEGKMGYEDF VYFILSEEDK TSEPGLEYWF
401: KCIDLDGNSI LTRNEMQFFY EEQLHRMECM GQEPVLFEDI LCQMVDMINP EDQSYFALRD LKGNKLSSSV FNVLFNLNKF MAFETRDPFL IRQERENPNL
501: TEWDRFAHRE YIRLSMEEDA EDASNGSADV WDESLEAPF

Best Arabidopsis Sequence Match ( AT5G28850.2 )
(BLAST)

001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTSKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDDS SLEAPF

Arabidopsis Description

B''BETASerine/threonine protein phosphatase 2A regulatory subunit B''beta [Source:UniProtKB/Swiss-Prot;Acc:Q5QIT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.