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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
 plastid: 20363867
unclear: 26455813
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g116320.2.1
Solyc03g118540.2.1
Solyc05g005580.2.1
Solyc06g063290.2.1
Solyc06g068930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G30120.1 Solyc05g005580.2.1 AT1G70340.1 21798944
AT1G30120.1 Solyc03g118540.2.1 AT3G17860.1 21798944
AT1G30120.1 Solyc06g068930.1.1 AT3G17860.1 21798944
AT1G30120.1 Solyc06g063290.2.1 AT3G21140.1 21798944
AT1G30120.1 Solyc03g116320.2.1 AT3G47620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc08g016750.2.1 Tomato plastid 96.08 96.08
CDX90227 Canola cytosol, mitochondrion, peroxisome 43.14 94.62
Bra032361.1-P Field mustard cytosol, mitochondrion, peroxisome 70.83 94.14
Zm00001d000227_P001 Maize cytosol 70.1 89.66
Os03t0645100-01 Rice plastid 70.83 88.38
CDY54115 Canola mitochondrion, peroxisome, plastid 12.5 83.61
KRH58644 Soybean nucleus 81.37 81.98
AT2G34590.1 Thale cress plastid 80.39 80.79
VIT_04s0043g00720.t01 Wine grape plastid 79.9 80.49
KRH05520 Soybean plastid 78.68 79.65
CDY63670 Canola plastid 78.43 79.4
KRH42550 Soybean plastid 78.92 79.31
KRH15497 Soybean plastid 78.43 79.01
Bra010796.1-P Field mustard plastid 77.7 78.66
CDY51472 Canola plastid 70.34 78.63
GSMUA_Achr5P02560_001 Banana plastid 71.32 78.44
AT1G30120.1 Thale cress plastid 77.7 78.08
Zm00001d033225_P002 Maize plastid 73.04 77.81
EER93752 Sorghum plastid 73.28 77.26
EES16391 Sorghum plastid 74.26 75.94
TraesCS5D01G384100.1 Wheat golgi 73.04 75.83
TraesCS5A01G374500.1 Wheat plastid 72.79 75.57
TraesCS5B01G376400.1 Wheat plastid 72.55 75.32
Os12t0616900-01 Rice plastid 72.06 75.19
PGSC0003DMT400080554 Potato plastid 79.9 74.77
TraesCS5A01G030800.1 Wheat plastid 70.34 73.4
TraesCS5B01G030400.1 Wheat plastid 70.34 73.03
HORVU0Hr1G009910.2 Barley plastid 70.34 72.84
CDY54117 Canola cytosol 20.59 72.41
GSMUA_Achr2P12960_001 Banana vacuole 10.78 70.97
GSMUA_Achr4P31470_001 Banana mitochondrion 45.34 70.88
TraesCS5D01G039000.1 Wheat plastid 70.1 70.62
CDY26291 Canola plastid 53.19 68.89
HORVU5Hr1G092920.4 Barley plastid 73.53 64.52
CDX90228 Canola plastid 15.93 48.87
CDY54116 Canola cytosol 4.41 45.0
Solyc06g072580.2.1 Tomato nucleus 35.05 38.96
Solyc03g097680.2.1 Tomato plastid 35.05 38.75
Solyc05g024160.2.1 Tomato mitochondrion 34.56 38.01
Solyc01g028900.2.1 Tomato plastid 27.45 31.28
Protein Annotations
Gene3D:3.40.50.920Gene3D:3.40.50.970MapMan:5.1.2.2.1.2GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152InterPro:IPR009014UniProt:K4BP15PFAM:PF02779PFAM:PF02780PANTHER:PTHR11624
PANTHER:PTHR11624:SF95SMART:SM00861SUPFAM:SSF52518SUPFAM:SSF52922EnsemblPlantsGene:Solyc04g008590.2EnsemblPlants:Solyc04g008590.2.1
InterPro:THDP-bindingInterPro:Transketo_C/PFOR_IIInterPro:Transketolase-like_Pyr-bdInterPro:Transketolase_CUniParc:UPI0002767152SEG:seg
Description
Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:K4BP15]
Coordinates
chr4:+:2195990..2201197
Molecular Weight (calculated)
44333.4 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.120
Length
408 amino acids
Sequence
(BLAST)
001: MAAIIQGIGA ATALTSASSL DTKKTFFSNS RRSLSERKGR TFVVRSDGGL SYGLNGRGGR AEQLITNAVA TKEDTAAAST SSKPGHELLL FEALREGLEE
101: EMDRDPAVCV MGEDVGHYGG SYKVTKGLAP KYGDLRVLDT PIAENSFTGM GIGAAMTGLR PVIEGMNMGF LLLAFNQISN NCGMLHYTSG GQFKIPVVIR
201: GPGGVGRQLG AEHSQRLESY FQSIPGIQMV ACSTPYNAKG LMKAAIRSDN PVILFEHVLL YNLKERIPDE EYVLNLEEAE MVRPGEHVTI LTYSRMRYHV
301: MQAAKTLVNK GYDPEVIDIR SLKPFDLHTI GNSVKKTHRV LIVEECMRTG GIGASLTAAI TENFHDYLDA PIICLSSQDV PTPYAGTLEN WTVVQPPQIV
401: TAVEQLCQ
Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)
001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
Arabidopsis Description
E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.