CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER93592
EER98873
EES02630
EES07255
EES15016
KXG25583
OQU86510

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	EER93592	AT1G14920.1	21798944
AT1G30120.1	EES02630	AT1G70340.1	21798944
AT1G30120.1	OQU86510	AT1G70340.1	21798944
AT1G30120.1	EER98873	AT3G17860.1	21798944
AT1G30120.1	EES15016	AT3G17860.1	21798944
AT1G30120.1	KXG25583	AT3G21140.1	21798944
AT1G30120.1	EER88112	AT3G47620.1	21798944
AT1G30120.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000227_P001	Maize	cytosol	79.45	99.37
CDX90227	Canola	cytosol, mitochondrion, peroxisome	43.11	92.47
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	69.17	89.9
EER93752	Sorghum	plastid	85.46	88.11
Os12t0616900-01	Rice	plastid	84.21	85.93
HORVU0Hr1G009910.2	Barley	plastid	82.71	83.76
TraesCS5B01G030400.1	Wheat	plastid	81.45	82.7
TraesCS5A01G030800.1	Wheat	plastid	78.95	80.56
TraesCS5D01G039000.1	Wheat	plastid	80.95	79.75
VIT_10s0003g03770.t01	Wine grape	plastid	75.69	77.24
GSMUA_Achr5P02560_001	Banana	plastid	70.18	75.47
KRH05520	Soybean	plastid	76.19	75.43
CDY54115	Canola	mitochondrion, peroxisome, plastid	11.53	75.41
VIT_04s0043g00720.t01	Wine grape	plastid	75.94	74.81
Bra010796.1-P	Field mustard	plastid	75.44	74.69
KRH58644	Soybean	nucleus	75.44	74.32
KRH15497	Soybean	plastid	75.44	74.32
Solyc04g008590.2.1	Tomato	plastid	75.94	74.26
CDY63670	Canola	plastid	74.69	73.95
KRH42550	Soybean	plastid	75.19	73.89
CDY51472	Canola	plastid	67.17	73.42
Solyc08g016750.2.1	Tomato	plastid	74.94	73.28
AT1G30120.1	Thale cress	plastid	73.93	72.66
AT2G34590.1	Thale cress	plastid	73.93	72.66
GSMUA_Achr2P12960_001	Banana	vacuole	11.28	72.58
PGSC0003DMT400019358	Potato	plastid	75.44	72.18
GSMUA_Achr4P31470_001	Banana	mitochondrion	47.12	72.03
CDY54117	Canola	cytosol	20.05	68.97
PGSC0003DMT400080554	Potato	plastid	75.19	68.81
CDY26291	Canola	plastid	53.13	67.3
CDY54116	Canola	cytosol	4.51	45.0
CDX90228	Canola	plastid	13.03	39.1
KXG25507	Sorghum	mitochondrion	36.34	38.77
EER97019	Sorghum	mitochondrion	35.84	38.13
EER98039	Sorghum	mitochondrion	26.57	28.73

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	EntrezGene:8084420	UniProt:C5YSC6	EnsemblPlants:EES16391
ProteinID:EES16391	ProteinID:EES16391.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0006086
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR009014	PFAM:PF02779
PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF93	SMART:SM00861	EnsemblPlantsGene:SORBI_3008G173000	SUPFAM:SSF52518
SUPFAM:SSF52922	unigene:Sbi.3562	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI0001A88188	RefSeq:XP_002442553.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:60665192..60669664

Molecular Weight (calculated)

42563.6 Da

IEP (calculated)

7.261

GRAVY (calculated)

0.043

Length

399 amino acids

Sequence
(BLAST)

001: MAAAASSALH AVGAVASAKP RSAAPAVARR RSVRVAAGAA AKGGPGSSGR GRLVARNAVA AKADEAAAAA GSKSGGHELL LFEALREALI EEMNLDPTVC
101: VMGEDVGHYG GSYKVTKGLA EMFGDLRVLD TPIAENSFTG MGVGAAMKGL RPVVEGMNMG FLLLAYNQIS NNCGMLHYTS GGQFKIPIVI RGPGGVGRQL
201: GAEHSQRLES YFQSIPGLQM VACSTPYNAK GLMKAAIRSE NPVVLFEHVL LYNLKEKIPD EEYICCLEEA EMVRPGEHVT ILTYSRMRYH VMQAAKTLVN
301: KGYDPEVIDI RSLKPFDLHT IGNSIKKTHR VLIVEECMRT GGIGASLRSA IIDNFWDYLD APIMCLSSQD VPTPYAATLE DATVVQPAQI VAAVEQICQ

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.