CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91098
EER96652
EER97233
EER99092
EES03828
EES04495
EES04609
EES09292
EES13033
EES14266
EES14968
KXG21982
KXG30742
KXG37075
OQU76080
OQU77017
OQU85206
OQU89974

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14920.1	EER96652	AT1G22160.1	21798944
AT1G14920.1	EES14968	AT1G22160.1	21798944
AT1G14920.1	KXG30742	AT1G22160.1	21798944
AT1G14920.1	OQU76080	AT1G22160.1	21798944
AT1G14920.1	EER91098	AT1G79110.1	23482857
AT1G14920.1	KXG37075	AT2G36990.1	21798944
AT1G14920.1	KXG21982	AT3G05120.1	16709201
AT1G14920.1	KXG21982	AT3G05120.1	17194763
AT1G14920.1	KXG21982	AT3G05120.1	17416730
AT1G14920.1	KXG21982	AT3G05120.1	18827182
AT1G14920.1	KXG21982	AT3G05120.1	19500306
AT1G14920.1	EER91098	AT3G12920.1	23482857
AT1G14920.1	EER97233	AT3G16250.1	21798944
AT1G14920.1	EES13033	AT3G51180.1	21798944
AT1G14920.1	KXG21982	AT3G63010.1	16709201
AT1G14920.1	KXG21982	AT3G63010.1	17194763
AT1G14920.1	KXG21982	AT3G63010.1	18827182
AT1G14920.1	KXG21982	AT3G63010.1	19500306
AT1G14920.1	EER91098	AT4G19700.1	23482857
AT1G14920.1	OQU89974	AT4G20150.1	21798944
AT1G14920.1	OQU85206	AT4G24210.1	15155881
AT1G14920.1	OQU85206	AT4G24210.1	15161962
AT1G14920.1	OQU85206	AT4G24210.1	17194763
AT1G14920.1	KXG21982	AT5G27320.1	16709201
AT1G14920.1	KXG21982	AT5G27320.1	17194763
AT1G14920.1	KXG21982	AT5G27320.1	18827182
AT1G14920.1	KXG21982	AT5G27320.1	19500306
AT1G14920.1	EES09292	AT5G38420.1	21798944
AT1G14920.1	EER91098	AT5G45100.1	23482857
AT2G01570.1	EES04495	AT1G27370.1	22942378
AT2G01570.1	EES04609	AT1G27370.1	22942378
AT2G01570.1	OQU77017	AT1G27370.1	22942378
AT2G01570.1	EER91098	AT1G79110.1	23482857
AT2G01570.1	EER99092	AT2G42200.1	22942378
AT2G01570.1	EES14266	AT2G42200.1	22942378
AT2G01570.1	KXG21982	AT3G05120.1	16709201
AT2G01570.1	KXG21982	AT3G05120.1	17194763
AT2G01570.1	KXG21982	AT3G05120.1	17416730
AT2G01570.1	KXG21982	AT3G05120.1	19500306
AT2G01570.1	EER91098	AT3G12920.1	23482857
AT2G01570.1	EER97233	AT3G16250.1	21798944
AT2G01570.1	KXG21982	AT3G63010.1	16709201
AT2G01570.1	KXG21982	AT3G63010.1	17194763
AT2G01570.1	KXG21982	AT3G63010.1	18827182
AT2G01570.1	KXG21982	AT3G63010.1	19429606
AT2G01570.1	KXG21982	AT3G63010.1	19500306
AT2G01570.1	EES03828	AT4G04770.1	21798944
AT2G01570.1	EER91098	AT4G19700.1	23482857
AT2G01570.1	OQU85206	AT4G24210.1	15155881
AT2G01570.1	OQU85206	AT4G24210.1	15161962
AT2G01570.1	KXG21982	AT5G27320.1	16709201
AT2G01570.1	KXG21982	AT5G27320.1	17194763
AT2G01570.1	KXG21982	AT5G27320.1	19500306
AT2G01570.1	EER91098	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033680_P001	Maize	nucleus	94.9	94.44
TraesCS4A01G271000.1	Wheat	cytosol	84.85	85.81
TraesCS4B01G043100.1	Wheat	cytosol	84.85	85.67
Os03t0707600-01	Rice	nucleus	85.17	85.44
TraesCS4D01G040400.1	Wheat	cytosol	84.85	85.39
HORVU4Hr1G006930.1	Barley	nucleus	83.89	85.11
TraesCS4A01G466700.1	Wheat	cytosol, nucleus, peroxisome	41.31	79.45
GSMUA_Achr10P...	Banana	cytosol	54.86	71.97
GSMUA_Achr8P18250_001	Banana	cytosol	52.47	68.68
KRH42544	Soybean	cytosol, nucleus, plastid	51.99	63.06
KRH58636	Soybean	nucleus	51.99	62.33
GSMUA_Achr1P21300_001	Banana	nucleus	50.56	61.43
AT1G14920.1	Thale cress	nucleus	51.36	60.41
CDY36236	Canola	cytosol, nucleus, plastid	53.11	59.89
Bra024875.1-P	Field mustard	nucleus	52.63	57.59
CDY17662	Canola	cytosol, nucleus, plastid	52.47	57.52
VIT_01s0011g05260.t01	Wine grape	cytosol	53.11	56.44
AT2G01570.1	Thale cress	mitochondrion, nucleus	52.47	56.05
CDY04092	Canola	cytosol	46.73	54.87
CDY64837	Canola	cytosol	47.05	54.43
Bra017443.1-P	Field mustard	cytosol	46.89	53.75
OQU87235	Sorghum	extracellular	22.49	47.8
OQU83473	Sorghum	cytosol	27.11	40.28
EES02045	Sorghum	cytosol, plastid	24.08	32.9
KXG22896	Sorghum	cytosol, plasma membrane	25.2	29.98
KXG36498	Sorghum	cytosol, plastid	21.85	29.78
KXG23987	Sorghum	cytosol	24.88	29.71
KXG29713	Sorghum	cytosol	18.5	29.22
EES01920	Sorghum	cytosol	23.13	27.0
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	23.92	26.83
OQU81603	Sorghum	cytosol	15.31	26.82
EES16518	Sorghum	cytosol	18.98	26.44
EES09233	Sorghum	cytosol	20.1	25.87
OQU76691	Sorghum	cytosol, extracellular	19.3	25.85
KXG22822	Sorghum	mitochondrion	23.76	25.82
EES18409	Sorghum	cytosol	20.26	25.76
OQU77885	Sorghum	cytosol	18.02	23.44
OQU77884	Sorghum	plasma membrane	16.75	23.08
OQU82754	Sorghum	plastid	26.16	23.07
EER87757	Sorghum	mitochondrion	23.29	22.92

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	EntrezGene:8062929	UniProt:C5WNR2
InterPro:DELLA_N_sf	EnsemblPlants:EER93592	ProteinID:EER93592	ProteinID:EER93592.1	GO:GO:0000003	GO:GO:0000989
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003712	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719	GO:GO:0009723	GO:GO:0009737
GO:GO:0009791	GO:GO:0009863	GO:GO:0009867	GO:GO:0009938	GO:GO:0009987	GO:GO:0010187
GO:GO:0042538	GO:GO:0043565	GO:GO:1903506	GO:GO:2000033	GO:GO:2000377	InterPro:IPR005202
InterPro:IPR038088	PFAM:PF03514	PFAM:PF12041	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF47
SMART:SM01129	EnsemblPlantsGene:SORBI_3001G120900	unigene:Sbi.9966	InterPro:TF_DELLA	InterPro:TF_DELLA_N	InterPro:TF_GRAS
UniParc:UPI0001A828AC	RefSeq:XP_002466594.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:9381697..9384098

Molecular Weight (calculated)

66275.9 Da

IEP (calculated)

4.898

GRAVY (calculated)

-0.191

Length

627 amino acids

Sequence
(BLAST)

001: MKREYQDAGG SGGDMGSSKD KMMVAAAGAG EQEEELDEML ASLGYKVRSS DMADVAQKLE QLEMAMGMGG VGGAGATADD GFISHLATDT VHYNPSDLSS
101: WLESMLSELN APPPPLPPAT TPPAPRLAST SSTVTSGAAA GAGYFDLPPA VDSSSSTYAL KPIPSPVAVA SADPSSTDST REPKRMRTGG GSTSSSSSSS
201: SSMDGGRTRS SVVEAAPPAT QAPAAANGPA VPVVVMDTQE AGIRLVHALL ACAEAVQQEN FSAADALVKQ IPMLASSQGG AMRKVAAYFG EALARRVYRF
301: RPTPDTSLLD AAVADFLHAH FYESCPYLKF AHFTANQAIL EAFAGCRRVH VVDFGIKQGL QWPALLQALA LRPGGPPSFR LTGVGPPQHD ETDALQQVGW
401: KLAQFAHTIR VDFQYRGLVA ATLADLEPFM LQPEGDDKDE EPEVIAVNSV FELHRLLAQP GALEKVLGTV RAVRPRIVTV VEQEANHNSG TFLDRFTESL
501: HYYSTMFDSL EGAGSGQSTD ASPAAAGGTD QVMSEVYLGR QICNVVACEG AERTERHETL SQWRGRLVGS GFEPVHLGSN AYKQASTLLA LFNGGDGYRV
601: EEKDGCLTLG WHTRPLIATS AWRLAAP

Best Arabidopsis Sequence Match ( AT2G01570.1 )
(BLAST)

001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY

Arabidopsis Description

RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.