CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	EER93592	AT1G14920.1	22942378
AT1G27360.1	EER93592	AT2G01570.1	22942378
AT1G27370.1	EER93592	AT1G14920.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014698_P001	Maize	nucleus	87.5	87.7
Os06t0703500-02	Rice	nucleus	61.82	57.26
EES04495	Sorghum	nucleus	54.32	49.79
GSMUA_Achr5P21990_001	Banana	nucleus	40.0	40.65
VIT_01s0010g03710.t01	Wine grape	nucleus	40.91	37.74
VIT_11s0065g00170.t01	Wine grape	nucleus	39.77	37.63
PGSC0003DMT400084734	Potato	nucleus	38.86	36.77
Solyc05g015510.2.1	Tomato	nucleus	37.95	36.07
KRG97402	Soybean	nucleus	35.0	35.57
PGSC0003DMT400068752	Potato	nucleus	30.45	34.81
KRH31506	Soybean	nucleus	35.0	34.76
EES04609	Sorghum	nucleus	26.36	34.42
Bra033671.1-P	Field mustard	nucleus	28.18	34.25
Solyc04g045560.2.1	Tomato	nucleus	27.05	34.0
CDY43604	Canola	nucleus	29.32	33.51
Bra027478.1-P	Field mustard	nucleus	29.32	33.08
CDY32959	Canola	nucleus	29.32	33.08
CDY03913	Canola	nucleus	27.5	32.61
AT5G43270.1	Thale cress	nucleus	30.91	32.46
Bra030040.1-P	Field mustard	nucleus	27.95	31.54
CDY15713	Canola	nucleus	27.95	31.54
AT1G27370.1	Thale cress	nucleus	28.18	31.31
AT1G27360.1	Thale cress	nucleus	27.95	31.3
CDY27611	Canola	nucleus	25.91	31.23
CDX84928	Canola	nucleus	25.68	31.04
Bra032822.1-P	Field mustard	nucleus	25.68	30.96
Bra032823.1-P	Field mustard	nucleus	22.95	30.79
CDY27612	Canola	nucleus	22.95	30.7
CDY03914	Canola	nucleus	25.91	30.65
CDY11816	Canola	nucleus	25.23	30.41
CDY67700	Canola	nucleus	23.86	30.35
CDY15712	Canola	nucleus	25.68	30.21
Bra010949.1-P	Field mustard	nucleus	25.0	30.05
Bra030041.1-P	Field mustard	nucleus	25.45	29.95
CDX84927	Canola	nucleus	24.32	29.16
EER97257	Sorghum	nucleus	13.41	27.44
CDY22356	Canola	nucleus	31.82	26.98
CDY47812	Canola	nucleus	31.36	26.74
KXG36284	Sorghum	nucleus	12.27	24.77
EES01979	Sorghum	nucleus	20.23	22.08
EER99092	Sorghum	nucleus	19.32	21.91
EES11232	Sorghum	nucleus	18.86	19.86
EES14266	Sorghum	nucleus	18.41	19.8
KXG25534	Sorghum	nucleus	20.45	19.74
EES11579	Sorghum	nucleus	17.73	19.5
EER97011	Sorghum	nucleus	20.23	19.18
OQU84482	Sorghum	nucleus	17.27	17.08
EER88765	Sorghum	nucleus	16.36	16.22

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EntrezGene:8065582	UniProt:A0A1W0VUS8	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	EnsemblPlants:OQU77017	ProteinID:OQU77017	ProteinID:OQU77017.1
ProteinID:OQU77018.1	ProteinID:OQU77020.1	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF65
InterPro:SBP_dom	InterPro:SBP_sf	EnsemblPlantsGene:SORBI_3010G254200	SUPFAM:SSF103612	UniParc:UPI0001A897C3	RefSeq:XP_002438971.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:59294356..59299852

Molecular Weight (calculated)

47692.6 Da

IEP (calculated)

9.982

GRAVY (calculated)

-0.545

Length

440 amino acids

Sequence
(BLAST)

001: MGSFGMNWNQ KNSMVWDWEH LVPSVSNAVT RHGSANSSGG TLTSSSELGH GSSKSSISAS IDSPSGVGNS LEFNFAAVQR HVKNTGTNGR VDDSGNSPSS
101: MIAFSQGEPL ISLKLGKRAY FENVCGGQEA KVSAPSDVTS AVTVVKKTKV SQQNAKNWYC QVEGCKVDLS SAKDYNRKHK VCVAHSKAPK VVVAGLERRF
201: CQQCSRFHGL AEFDQNKRSC RRRLTHHNAR RRKPQADAIS FNSSRLSSMF YDTSHRTNLF FSQPLYGQVR SNAVSPWDNS GGFKFMETKH LSVQPTKTVG
301: LDELHFSTPQ ISTSVVAHTG HHHNFDRFMP FKGTNTKVLN QVSGVEASAT ASNSNNGAPE PGRALSLLSD GSWGSNSAVI QQPPSHADAG ALPPLATVAV
401: SNTAARHPLD PSLGRFWQDD HPPLDGPAPQ IQELAHLRTW

Best Arabidopsis Sequence Match ( AT1G27360.4 )
(BLAST)

001: MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK

Arabidopsis Description

SPL11Squamosa promoter-binding-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.