CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97933
KRH30942
KRH42544
KRH58636

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	KRH42544	AT1G14920.1	22942378
AT1G27360.1	KRH58636	AT1G14920.1	22942378
AT1G27360.1	KRG97933	AT1G66350.1	22942378
AT1G27360.1	KRH30942	AT1G66350.1	22942378
AT1G27360.1	KRH42544	AT2G01570.1	22942378
AT1G27360.1	KRH58636	AT2G01570.1	22942378
AT1G27360.1	KRG97933	AT3G03450.1	22942378
AT1G27360.1	KRH30942	AT3G03450.1	22942378
AT1G27360.1	KRG97933	AT5G17490.1	22942378
AT1G27360.1	KRH30942	AT5G17490.1	22942378
AT1G27370.1	KRH42544	AT1G14920.1	22942378
AT1G27370.1	KRH58636	AT1G14920.1	22942378
AT1G27370.1	KRG97933	AT1G66350.1	22942378
AT1G27370.1	KRH30942	AT1G66350.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97402	Soybean	nucleus	90.97	93.07
Os02t0139400-01	Rice	nucleus	29.12	45.74
KRH21401	Soybean	nucleus	13.77	44.2
KRH10909	Soybean	nucleus	13.54	43.48
VIT_11s0065g00170.t01	Wine grape	nucleus	44.7	42.58
KRH20415	Soybean	nucleus	13.09	40.85
KRH50085	Soybean	nucleus	13.09	39.73
GSMUA_Achr9P14160_001	Banana	nucleus	40.41	39.08
TraesCS6B01G183400.1	Wheat	nucleus	28.67	38.84
TraesCS6D01G145200.1	Wheat	nucleus	28.44	38.77
TraesCS6A01G155300.1	Wheat	nucleus	28.67	38.72
HORVU6Hr1G031450.6	Barley	nucleus	28.44	38.65
Bra030040.1-P	Field mustard	nucleus	33.86	38.46
CDY27611	Canola	nucleus	31.6	38.36
CDY15713	Canola	nucleus	33.63	38.21
CDY03914	Canola	nucleus	32.05	38.17
Bra032822.1-P	Field mustard	nucleus	31.38	38.08
CDY03913	Canola	nucleus	31.83	38.01
CDY15712	Canola	nucleus	32.05	37.97
CDX84928	Canola	nucleus	31.15	37.91
Bra030041.1-P	Field mustard	nucleus	31.83	37.7
Bra032823.1-P	Field mustard	nucleus	27.54	37.2
GSMUA_Achr4P12470_001	Banana	nucleus	29.35	37.14
AT1G27370.1	Thale cress	nucleus	33.18	37.12
CDY27612	Canola	nucleus	27.54	37.08
Os02t0174100-02	Rice	nucleus	20.99	37.05
CDY67700	Canola	nucleus	28.89	36.99
CDY11816	Canola	nucleus	30.47	36.99
KRH22053	Soybean	nucleus	15.58	36.9
Bra010949.1-P	Field mustard	nucleus	30.25	36.61
AT1G27360.1	Thale cress	nucleus	32.28	36.39
TraesCS6D01G098500.1	Wheat	nucleus	38.83	36.36
KRH27270	Soybean	nucleus	15.35	36.36
Zm00001d053775_P001	Maize	nucleus	27.09	36.25
CDX84927	Canola	nucleus	30.02	36.24
Zm00001d015410_P002	Maize	nucleus	27.09	36.14
GSMUA_Achr4P05720_001	Banana	nucleus	28.22	36.13
GSMUA_Achr6P36010_001	Banana	nucleus	35.67	36.07
GSMUA_Achr5P21990_001	Banana	nucleus	35.21	36.03
TraesCS6A01G110100.2	Wheat	nucleus	38.6	36.0
EES04609	Sorghum	nucleus	27.31	35.91
TraesCS6B01G138400.1	Wheat	nucleus	38.15	35.73
GSMUA_Achr9P23140_001	Banana	nucleus	33.41	35.58
Os06t0703500-02	Rice	nucleus	37.92	35.37
KRG88952	Soybean	nucleus	17.83	35.27
GSMUA_Achr5P22630_001	Banana	nucleus	36.12	35.24
OQU77017	Sorghum	nucleus	34.76	35.0
KRH28893	Soybean	nucleus	11.51	34.93
Zm00001d014698_P001	Maize	nucleus	34.31	34.62
GSMUA_Achr3P05360_001	Banana	nucleus	36.12	34.48
KRG88838	Soybean	nucleus	14.67	34.21
GSMUA_Achr3P27750_001	Banana	nucleus	36.12	34.12
GSMUA_Achr10P...	Banana	nucleus	38.37	33.73
EES04495	Sorghum	nucleus	36.34	33.54
KRH55227	Soybean	nucleus	13.77	32.97
HORVU6Hr1G019700.3	Barley	nucleus	37.7	32.94
Os06t0663500-00	Rice	nucleus	24.83	32.07
GSMUA_Achr10P...	Banana	nucleus	34.99	31.83
KRH22367	Soybean	nucleus	11.29	31.65
Zm00001d053890_P003	Maize	nucleus	32.96	30.29
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	35.21	29.38
GSMUA_Achr8P23820_001	Banana	nucleus	34.54	29.03
KRH75287	Soybean	nucleus	21.44	27.62
KRH71914	Soybean	nucleus, plastid	21.67	26.82
KRG95361	Soybean	nucleus	21.67	26.74
KRH38141	Soybean	nucleus, plastid	22.35	26.54
KRH67040	Soybean	nucleus	21.9	26.43
KRH41121	Soybean	nucleus	22.12	24.75
KRH59812	Soybean	nucleus	21.67	24.62
KRH75288	Soybean	nucleus	15.8	24.39
KRH66613	Soybean	nucleus	18.51	23.98
KRH48746	Soybean	nucleus	18.51	23.98
KRH63786	Soybean	nucleus	19.19	22.91
KRH54164	Soybean	nucleus	20.54	21.98
KRH06918	Soybean	nucleus	18.06	21.92
KRH66611	Soybean	nucleus	16.48	21.73
KRH48747	Soybean	nucleus	16.48	21.6
KRG94562	Soybean	nucleus	17.61	21.37
KRH54739	Soybean	nucleus	17.16	20.0
KRH75117	Soybean	nucleus	20.77	19.05
KRH70968	Soybean	nucleus	20.32	18.67
KRH07602	Soybean	nucleus	8.8	18.06
KRH03167	Soybean	nucleus	21.44	17.46
KRH56776	Soybean	nucleus	21.44	17.3
KRH63174	Soybean	nucleus	20.54	16.13

Protein Annotations

EntrezGene:100796013	MapMan:15.5.18	Gene3D:4.10.1100.10	EMBL:ACUP02007145	EnsemblPlantsGene:GLYMA_11G251500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	UniProt:K7LRZ2	EnsemblPlants:KRH31506
ProteinID:KRH31506	ProteinID:KRH31506.1	ProteinID:KRH31507.1	ProteinID:KRH31508.1	ProteinID:KRH31509.1	ProteinID:KRH31510.1
ProteinID:KRH31511.1	ProteinID:KRH31512.1	ProteinID:KRH31513.1	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251
PANTHER:PTHR31251:SF30	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI0001D84BFC	SEG:seg

Description

hypothetical protein

Coordinates

chr11:-:34283168..34289333

Molecular Weight (calculated)

48621.3 Da

IEP (calculated)

7.405

GRAVY (calculated)

-0.702

Length

443 amino acids

Sequence
(BLAST)

001: MECNAKSLGQ WDWEHLFFFN TKAAENPRLQ PTDCSSEADR EINVGMLHPS GGSACSGSEL IHASSSRSSK SASNNSSSNG DSKASILTLE GSHDDSTGKK
101: ELCNGEPIET SPAAVPSPVS GEPLLTLKLG KRLYFEDVCT GSDSKKPSSF DIPISSGKKH KTSSQTLQHP SCQVEGCGLD LSSAKDYHRK HRVCEAHSKS
201: PKVVITGLER RFCQQCSRFH ALSEFDDKKR SCRRRLSDHN ARRRKPQPDS IQLNPSALSS SPYDGRQIVS PFAFSRTATN LAWQDMHPQT KEFLPKPAKA
301: FNKIPSIVSM LSDDSSGLLT SRGIATKSTV PDVAGMEDPI RLSDPNGTQD VNRALSLLST NSSSSWGAYE TKSLSLEHST RATHSITQHH LPLPSSAEYW
401: HTDHQQHSSM CISFTDCDSS NRFQDFQLLS SPYESPFPCN QLD

Best Arabidopsis Sequence Match ( AT1G27360.3 )
(BLAST)

001: MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK

Arabidopsis Description

SPL11Squamosa promoter-binding-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.