Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27370.1 | CDY55037 | AT1G66350.1 | 22942378 |
| AT1G27370.1 | CDY70426 | AT1G66350.1 | 22942378 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15713 | Canola | nucleus | 95.42 | 90.77 |
| Bra030040.1-P | Field mustard | nucleus | 95.15 | 90.51 |
| CDY27611 | Canola | nucleus | 74.93 | 76.16 |
| CDX84928 | Canola | nucleus | 73.05 | 74.45 |
| CDY67700 | Canola | nucleus | 64.69 | 69.36 |
| CDY03914 | Canola | nucleus | 68.46 | 68.28 |
| AT1G27370.1 | Thale cress | nucleus | 72.78 | 68.18 |
| CDY15712 | Canola | nucleus | 68.19 | 67.65 |
| CDY27612 | Canola | nucleus | 58.49 | 65.96 |
| CDY11816 | Canola | nucleus | 64.15 | 65.21 |
| CDX84927 | Canola | nucleus | 62.8 | 63.49 |
| Os02t0139400-01 | Rice | nucleus | 29.65 | 39.01 |
| CDY27935 | Canola | nucleus | 14.56 | 36.73 |
| CDY17204 | Canola | nucleus | 14.02 | 36.62 |
| CDY57212 | Canola | nucleus | 13.48 | 35.46 |
| CDY37684 | Canola | nucleus | 13.48 | 35.46 |
| CDY32959 | Canola | nucleus | 35.31 | 33.59 |
| CDY43604 | Canola | nucleus | 34.5 | 33.25 |
| Os02t0174100-02 | Rice | nucleus | 22.1 | 32.67 |
| CDY50515 | Canola | nucleus | 13.75 | 32.48 |
| KRG97402 | Soybean | nucleus | 37.74 | 32.33 |
| CDY24113 | Canola | nucleus | 14.02 | 32.3 |
| KRH31506 | Soybean | nucleus | 38.01 | 31.83 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 35.04 | 31.25 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 28.3 | 30.0 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 36.66 | 29.69 |
| CDY61210 | Canola | nucleus | 14.29 | 29.61 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 34.77 | 29.45 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 36.66 | 29.25 |
| CDX97645 | Canola | nucleus | 14.02 | 29.05 |
| CDY25876 | Canola | nucleus | 13.75 | 28.98 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 25.61 | 28.96 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 25.34 | 28.75 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 33.42 | 28.64 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 35.04 | 28.63 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 25.07 | 28.62 |
| Zm00001d015410_P002 | Maize | nucleus | 25.61 | 28.61 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 25.07 | 28.53 |
| CDX98540 | Canola | nucleus | 13.75 | 28.49 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 35.58 | 28.45 |
| CDY32310 | Canola | nucleus | 13.48 | 28.41 |
| CDY20128 | Canola | nucleus | 13.48 | 28.41 |
| EES04609 | Sorghum | nucleus | 25.61 | 28.19 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 26.15 | 28.03 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 35.31 | 27.93 |
| Zm00001d014698_P001 | Maize | nucleus | 32.61 | 27.56 |
| OQU77017 | Sorghum | nucleus | 32.61 | 27.5 |
| EES04495 | Sorghum | nucleus | 35.58 | 27.5 |
| Zm00001d053775_P001 | Maize | nucleus | 24.53 | 27.49 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 35.04 | 27.48 |
| CDX79544 | Canola | nucleus | 13.75 | 27.27 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 34.77 | 27.27 |
| CDY47812 | Canola | nucleus | 37.74 | 27.13 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 34.5 | 26.95 |
| GSMUA_Achr10P... | Banana | nucleus | 35.04 | 26.69 |
| Os06t0703500-02 | Rice | nucleus | 33.96 | 26.53 |
| GSMUA_Achr10P... | Banana | nucleus | 35.58 | 26.19 |
| CDY22356 | Canola | nucleus | 36.39 | 26.01 |
| Os06t0663500-00 | Rice | nucleus | 23.99 | 25.95 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 35.31 | 25.84 |
| Zm00001d053890_P003 | Maize | nucleus | 33.42 | 25.73 |
| CDX95958 | Canola | nucleus | 20.22 | 25.08 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 35.58 | 24.86 |
| CDY69014 | Canola | nucleus | 20.22 | 23.51 |
| CDY50300 | Canola | nucleus | 20.22 | 22.87 |
| CDX79888 | Canola | nucleus | 22.64 | 22.83 |
| CDX98259 | Canola | nucleus | 19.95 | 22.77 |
| CDY06881 | Canola | nucleus | 22.1 | 22.59 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 32.08 | 22.58 |
| CDX96251 | Canola | nucleus | 19.95 | 22.56 |
| CDX81606 | Canola | nucleus | 20.22 | 22.52 |
| CDY53504 | Canola | nucleus | 22.37 | 22.43 |
| CDY61750 | Canola | nucleus | 18.6 | 22.4 |
| CDY14818 | Canola | nucleus | 21.83 | 22.07 |
| CDY45826 | Canola | nucleus | 20.22 | 21.99 |
| CDX84872 | Canola | nucleus | 20.22 | 21.99 |
| CDX90071 | Canola | nucleus | 18.33 | 21.79 |
| CDX71667 | Canola | nucleus | 21.02 | 21.73 |
| CDY47656 | Canola | nucleus | 18.87 | 21.6 |
| CDY34028 | Canola | nucleus | 19.95 | 21.26 |
| CDX67715 | Canola | nucleus | 18.06 | 21.2 |
| CDY15132 | Canola | nucleus | 13.21 | 21.03 |
| CDY38043 | Canola | nucleus | 17.79 | 19.7 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.08 | 6.9 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078EWI7 | EnsemblPlants:CDY03913 | ProteinID:CDY03913 | ProteinID:CDY03913.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00117406001 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI0004EED445 | SEG:seg | : | : | : | : |
Description
BnaC07g11380D
Coordinates
chrLK031947:+:775688..777547
Molecular Weight (calculated)
41711.5 Da
IEP (calculated)
8.135
GRAVY (calculated)
-0.815
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCNMRSPFL WDLENLILPN SSKTENDKDQ LTTATEWETD KGEGIESMFP CLWDTPVSKS SQSTSTNSSS PGVKQRMLAS ESSRGDSCCN IDLVQVKASV
101: ASAESDLSLK LGKRTYSEEF WGGNNNNDIS LTPPVVTRKK SKSSCGQSMQ VPRCQIDGCE LDLSSAKDYH RKHRVCENHS KCPKVSVNGI ERRFCQQCSR
201: FHAVSEFDET KRSCRKRLSH HNARRRKPQG VFPFNPDRVY DRRQHTNMLW NGLSLDTRSE EKFAWETTND IKPTQTESGF TLSFQRGNGS EQQLFACSNH
301: SYSAYQTSGG FSAGKPKFQL HGQGVGEYSG VLHESREFHR ALSLLSTSSD HLVQPHAQPL SLLFSYDGVP K
101: ASAESDLSLK LGKRTYSEEF WGGNNNNDIS LTPPVVTRKK SKSSCGQSMQ VPRCQIDGCE LDLSSAKDYH RKHRVCENHS KCPKVSVNGI ERRFCQQCSR
201: FHAVSEFDET KRSCRKRLSH HNARRRKPQG VFPFNPDRVY DRRQHTNMLW NGLSLDTRSE EKFAWETTND IKPTQTESGF TLSFQRGNGS EQQLFACSNH
301: SYSAYQTSGG FSAGKPKFQL HGQGVGEYSG VLHESREFHR ALSLLSTSSD HLVQPHAQPL SLLFSYDGVP K
001: MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
Arabidopsis Description
SPL11Squamosa promoter-binding-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.