Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022766.1-P | Field mustard | nucleus | 100.0 | 99.71 |
| CDY45826 | Canola | nucleus | 95.6 | 95.6 |
| AT5G50670.2 | Thale cress | nucleus | 81.52 | 77.44 |
| AT5G50570.2 | Thale cress | nucleus | 81.52 | 77.44 |
| CDX71667 | Canola | nucleus | 80.06 | 76.04 |
| CDY34028 | Canola | nucleus | 75.95 | 74.43 |
| VIT_17s0000g01260.t01 | Wine grape | nucleus | 45.75 | 38.9 |
| CDY17204 | Canola | nucleus | 15.84 | 38.03 |
| KRH59812 | Soybean | nucleus | 43.11 | 37.69 |
| Solyc05g015840.2.1 | Tomato | nucleus | 34.31 | 37.5 |
| CDY27935 | Canola | nucleus | 16.13 | 37.41 |
| PGSC0003DMT400056374 | Potato | nucleus | 34.6 | 36.99 |
| KRH63786 | Soybean | nucleus | 40.18 | 36.93 |
| KRH41121 | Soybean | nucleus | 42.82 | 36.87 |
| CDY57212 | Canola | nucleus | 14.96 | 36.17 |
| CDY37684 | Canola | nucleus | 14.37 | 34.75 |
| VIT_01s0010g03910.t01 | Wine grape | nucleus | 39.59 | 34.7 |
| CDY50515 | Canola | nucleus | 15.84 | 34.39 |
| KRH54164 | Soybean | nucleus | 41.64 | 34.3 |
| CDY24113 | Canola | nucleus | 16.13 | 34.16 |
| CDY61210 | Canola | nucleus | 16.42 | 31.28 |
| CDY25876 | Canola | nucleus | 15.54 | 30.11 |
| CDX97645 | Canola | nucleus | 15.25 | 29.05 |
| CDX98540 | Canola | nucleus | 14.96 | 28.49 |
| CDX79544 | Canola | nucleus | 15.54 | 28.34 |
| CDY20128 | Canola | nucleus | 14.37 | 27.84 |
| CDY32310 | Canola | nucleus | 14.08 | 27.27 |
| CDX95958 | Canola | nucleus | 21.99 | 25.08 |
| CDX96251 | Canola | nucleus | 24.05 | 25.0 |
| CDY50300 | Canola | nucleus | 23.75 | 24.7 |
| CDY61750 | Canola | nucleus | 22.29 | 24.68 |
| CDX81606 | Canola | nucleus | 23.75 | 24.32 |
| CDX98259 | Canola | nucleus | 23.17 | 24.31 |
| CDY69014 | Canola | nucleus | 21.99 | 23.51 |
| CDX67715 | Canola | nucleus | 21.11 | 22.78 |
| CDY06881 | Canola | nucleus | 24.05 | 22.59 |
| CDY47656 | Canola | nucleus | 21.41 | 22.53 |
| CDX79888 | Canola | nucleus | 24.05 | 22.28 |
| CDY53504 | Canola | nucleus | 24.05 | 22.16 |
| CDY14818 | Canola | nucleus | 23.46 | 21.8 |
| CDY43604 | Canola | nucleus | 24.05 | 21.3 |
| CDX90071 | Canola | nucleus | 19.06 | 20.83 |
| CDY67700 | Canola | nucleus | 20.82 | 20.52 |
| CDY32959 | Canola | nucleus | 23.17 | 20.26 |
| CDY03913 | Canola | nucleus | 21.99 | 20.22 |
| CDY38043 | Canola | nucleus | 19.65 | 20.0 |
| CDY03914 | Canola | nucleus | 21.7 | 19.89 |
| CDY15712 | Canola | nucleus | 21.7 | 19.79 |
| CDY27612 | Canola | nucleus | 19.06 | 19.76 |
| CDX84927 | Canola | nucleus | 21.11 | 19.62 |
| CDX84928 | Canola | nucleus | 20.82 | 19.51 |
| CDY27611 | Canola | nucleus | 20.82 | 19.45 |
| CDY11816 | Canola | nucleus | 20.82 | 19.45 |
| CDY15713 | Canola | nucleus | 21.99 | 19.23 |
| CDY15132 | Canola | nucleus | 11.73 | 17.17 |
| CDY22356 | Canola | nucleus | 23.46 | 15.41 |
| CDY47812 | Canola | nucleus | 23.17 | 15.31 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.76 | 10.34 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078D6R7 | EnsemblPlants:CDX84872 | ProteinID:CDX84872 | ProteinID:CDX84872.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00142194001 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF29 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI0004EE8577 | SEG:seg | : | : | : | : |
Description
BnaA03g13580D
Coordinates
chrLK031838:-:1679966..1681714
Molecular Weight (calculated)
37350.2 Da
IEP (calculated)
8.169
GRAVY (calculated)
-0.653
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWNFKLSSG YFSEFDQESV PDLTPVDASI SFGGSSSPPR RLQPKGDLPF DLKLGRNIGH SSSSSSSAFG KTEKVISLSK LKESASEASR SSKRTRGNNQ
101: IPICLVDGCD SDFSNCREYH KRHKVCDVHS KTPVVTINGN NQRFCQQCSR FHGLEEFDEG KKSCRKRLDG HNRRRRKPQP DHTDRTATFF QGSKLLDFSS
201: SPHVFPTTSV VSPSWGSGPV SVAMANGSSY GQNQSYVGSF PAKTGITFPI SSSPNSRGKQ FPFLQEEEDS SRMTSCIHDS DCALSLLSSS SSHLLQPQPP
301: LSLSQETVFY GSGLFENASA VSDGSGNEAV PLPQTFPPFH W
101: IPICLVDGCD SDFSNCREYH KRHKVCDVHS KTPVVTINGN NQRFCQQCSR FHGLEEFDEG KKSCRKRLDG HNRRRRKPQP DHTDRTATFF QGSKLLDFSS
201: SPHVFPTTSV VSPSWGSGPV SVAMANGSSY GQNQSYVGSF PAKTGITFPI SSSPNSRGKQ FPFLQEEEDS SRMTSCIHDS DCALSLLSSS SSHLLQPQPP
301: LSLSQETVFY GSGLFENASA VSDGSGNEAV PLPQTFPPFH W
001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
Arabidopsis Description
SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.