Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021094.1-P | Field mustard | nucleus | 98.86 | 98.86 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 31.82 | 96.55 |
| CDY32310 | Canola | nucleus | 94.89 | 94.89 |
| AT3G15270.1 | Thale cress | nucleus | 82.39 | 80.11 |
| CDX98540 | Canola | nucleus | 79.55 | 78.21 |
| CDX97645 | Canola | nucleus | 78.98 | 77.65 |
| CDY24113 | Canola | nucleus | 59.66 | 65.22 |
| CDY50515 | Canola | nucleus | 57.95 | 64.97 |
| CDY61210 | Canola | nucleus | 65.34 | 64.25 |
| CDY25876 | Canola | nucleus | 64.2 | 64.2 |
| PGSC0003DMT400058753 | Potato | nucleus | 38.64 | 50.37 |
| PGSC0003DMT400076399 | Potato | nucleus | 38.64 | 50.0 |
| CDY17204 | Canola | nucleus | 39.77 | 49.3 |
| VIT_10s0003g00050.t01 | Wine grape | nucleus | 39.2 | 49.29 |
| CDY27935 | Canola | nucleus | 40.91 | 48.98 |
| Solyc10g009080.2.1 | Tomato | nucleus | 37.5 | 48.89 |
| Solyc02g077920.2.1 | Tomato | nucleus | 36.36 | 47.06 |
| CDY57212 | Canola | nucleus | 35.23 | 43.97 |
| CDY37684 | Canola | nucleus | 34.66 | 43.26 |
| KRH21401 | Soybean | nucleus | 33.52 | 42.75 |
| KRH10909 | Soybean | nucleus | 32.95 | 42.03 |
| KRH50085 | Soybean | nucleus | 34.66 | 41.78 |
| KRH20415 | Soybean | nucleus | 32.39 | 40.14 |
| CDX79544 | Canola | nucleus | 35.23 | 33.16 |
| EER97257 | Sorghum | nucleus | 35.8 | 29.3 |
| Os07t0505200-01 | Rice | nucleus | 34.09 | 27.78 |
| Zm00001d021573_P001 | Maize | mitochondrion | 30.68 | 26.21 |
| Zm00001d006451_P001 | Maize | mitochondrion | 36.36 | 25.2 |
| KXG36284 | Sorghum | nucleus | 29.55 | 23.85 |
| CDY61750 | Canola | nucleus | 32.39 | 18.51 |
| CDX90071 | Canola | nucleus | 32.39 | 18.27 |
| CDX95958 | Canola | nucleus | 30.68 | 18.06 |
| CDY38043 | Canola | nucleus | 34.09 | 17.91 |
| CDX98259 | Canola | nucleus | 32.39 | 17.54 |
| CDY47656 | Canola | nucleus | 31.25 | 16.98 |
| CDY69014 | Canola | nucleus | 30.11 | 16.61 |
| CDY50300 | Canola | nucleus | 30.68 | 16.46 |
| CDX96251 | Canola | nucleus | 30.11 | 16.16 |
| CDX81606 | Canola | nucleus | 30.11 | 15.92 |
| CDY14818 | Canola | nucleus | 32.39 | 15.53 |
| CDX67715 | Canola | nucleus | 27.84 | 15.51 |
| CDX79888 | Canola | nucleus | 32.39 | 15.49 |
| CDY15132 | Canola | nucleus | 20.45 | 15.45 |
| CDY06881 | Canola | nucleus | 31.82 | 15.43 |
| CDY53504 | Canola | nucleus | 32.39 | 15.41 |
| CDY67700 | Canola | nucleus | 29.55 | 15.03 |
| CDY34028 | Canola | nucleus | 29.55 | 14.94 |
| CDX71667 | Canola | nucleus | 30.11 | 14.76 |
| CDY45826 | Canola | nucleus | 28.41 | 14.66 |
| CDX84872 | Canola | nucleus | 27.84 | 14.37 |
| CDY27612 | Canola | nucleus | 26.7 | 14.29 |
| CDY11816 | Canola | nucleus | 28.98 | 13.97 |
| CDX84927 | Canola | nucleus | 28.98 | 13.9 |
| CDX84928 | Canola | nucleus | 28.41 | 13.74 |
| CDY27611 | Canola | nucleus | 28.41 | 13.7 |
| CDY03913 | Canola | nucleus | 28.41 | 13.48 |
| CDY15713 | Canola | nucleus | 28.98 | 13.08 |
| CDY15712 | Canola | nucleus | 27.27 | 12.83 |
| CDY32959 | Canola | nucleus | 28.41 | 12.82 |
| CDY43604 | Canola | nucleus | 27.84 | 12.73 |
| CDY03914 | Canola | nucleus | 26.7 | 12.63 |
| CDY22356 | Canola | nucleus | 28.98 | 9.83 |
| CDY47812 | Canola | nucleus | 28.41 | 9.69 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078G679 | UniProt:A0A078G679 | EnsemblPlants:CDY20128 | ProteinID:CDY20128 |
| ProteinID:CDY20128.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00009986001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | InterPro:SBP_dom | InterPro:SBP_sf |
| SUPFAM:SSF103612 | UniParc:UPI0004EE31CC | SEG:seg | : | : | : |
Description
BnaA01g28740DBnaA01g28740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G679]
Coordinates
chrLK032103:+:308263..309199
Molecular Weight (calculated)
20502.1 Da
IEP (calculated)
10.137
GRAVY (calculated)
-1.206
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSQRWSYV KDKAIVSNLA EQEWENSMDG EEEDAGDEDK RKRMMERARG TNTDRVPPRL CQVHRCTANL TEAKQYYRRH KVCEVHAKAS AATVSGAKQR
101: FCQQCSRFHE LPEFDEAKRS CRMRLAGHNE RRRKVSGDSF GERSGRRGFS GQLIQTQERN KVDIKFPMAN TSFKRP
101: FCQQCSRFHE LPEFDEAKRS CRMRLAGHNE RRRKVSGDSF GERSGRRGFS GQLIQTQERN KVDIKFPMAN TSFKRP
001: MEGQRTQRRG YLKDKATVSN LVEEEMENGM DGEEEDGGDE DKRKKVMERV RGPSTDRVPS RLCQVDRCTV NLTEAKQYYR RHRVCEVHAK ASAATVAGVR
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R
Arabidopsis Description
SPL5SPL5 [Source:UniProtKB/TrEMBL;Acc:A0A178VL13]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.