Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030041.1-P | Field mustard | nucleus | 99.47 | 99.47 |
| CDY03914 | Canola | nucleus | 94.39 | 94.89 |
| CDY67700 | Canola | nucleus | 70.59 | 76.3 |
| CDX84927 | Canola | nucleus | 71.93 | 73.3 |
| CDY11816 | Canola | nucleus | 70.59 | 72.33 |
| CDY27612 | Canola | nucleus | 63.37 | 72.04 |
| CDY15713 | Canola | nucleus | 71.66 | 68.72 |
| CDY03913 | Canola | nucleus | 67.65 | 68.19 |
| CDY27611 | Canola | nucleus | 63.9 | 65.48 |
| AT1G27360.1 | Thale cress | nucleus | 68.72 | 65.39 |
| CDX84928 | Canola | nucleus | 62.03 | 63.74 |
| Os02t0139400-01 | Rice | nucleus | 29.14 | 38.65 |
| CDY27935 | Canola | nucleus | 13.9 | 35.37 |
| CDY17204 | Canola | nucleus | 13.37 | 35.21 |
| CDY32959 | Canola | nucleus | 35.29 | 33.85 |
| CDY43604 | Canola | nucleus | 34.49 | 33.51 |
| CDY57212 | Canola | nucleus | 12.3 | 32.62 |
| CDY37684 | Canola | nucleus | 12.3 | 32.62 |
| KRG97402 | Soybean | nucleus | 37.7 | 32.56 |
| Os02t0174100-02 | Rice | nucleus | 21.66 | 32.27 |
| KRH31506 | Soybean | nucleus | 37.97 | 32.05 |
| CDY50515 | Canola | nucleus | 13.37 | 31.85 |
| CDY24113 | Canola | nucleus | 13.37 | 31.06 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 35.83 | 29.26 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 35.03 | 28.85 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 35.56 | 28.6 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 33.42 | 28.54 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 26.2 | 28.32 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 32.62 | 28.18 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 31.28 | 28.12 |
| CDY25876 | Canola | nucleus | 13.1 | 27.84 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 24.33 | 27.83 |
| Zm00001d053775_P001 | Maize | nucleus | 24.6 | 27.79 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 24.33 | 27.74 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 24.06 | 27.69 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 24.06 | 27.61 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 25.67 | 27.43 |
| Zm00001d015410_P002 | Maize | nucleus | 24.33 | 27.41 |
| CDX97645 | Canola | nucleus | 13.1 | 27.37 |
| CDY61210 | Canola | nucleus | 13.1 | 27.37 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 33.96 | 27.37 |
| CDY32310 | Canola | nucleus | 12.83 | 27.27 |
| CDY20128 | Canola | nucleus | 12.83 | 27.27 |
| EES04609 | Sorghum | nucleus | 24.33 | 27.0 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 33.69 | 26.87 |
| CDY47812 | Canola | nucleus | 36.63 | 26.55 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 33.42 | 26.43 |
| CDX98540 | Canola | nucleus | 12.57 | 26.26 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 33.16 | 26.22 |
| CDX79544 | Canola | nucleus | 13.1 | 26.2 |
| GSMUA_Achr10P... | Banana | nucleus | 35.29 | 26.19 |
| Os06t0703500-02 | Rice | nucleus | 32.89 | 25.89 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 32.89 | 25.89 |
| OQU77017 | Sorghum | nucleus | 30.21 | 25.68 |
| CDY22356 | Canola | nucleus | 35.56 | 25.63 |
| Zm00001d014698_P001 | Maize | nucleus | 29.95 | 25.51 |
| GSMUA_Achr10P... | Banana | nucleus | 32.62 | 25.05 |
| EES04495 | Sorghum | nucleus | 31.82 | 24.79 |
| Os06t0663500-00 | Rice | nucleus | 22.73 | 24.78 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 33.16 | 24.46 |
| CDX95958 | Canola | nucleus | 19.25 | 24.08 |
| Zm00001d053890_P003 | Maize | nucleus | 29.95 | 23.24 |
| CDY50300 | Canola | nucleus | 20.05 | 22.87 |
| CDX81606 | Canola | nucleus | 20.32 | 22.82 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 31.82 | 22.58 |
| CDY69014 | Canola | nucleus | 19.25 | 22.57 |
| CDX96251 | Canola | nucleus | 19.79 | 22.56 |
| CDY45826 | Canola | nucleus | 20.32 | 22.29 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 31.55 | 22.22 |
| CDY61750 | Canola | nucleus | 18.18 | 22.08 |
| CDY15132 | Canola | nucleus | 13.64 | 21.89 |
| CDX98259 | Canola | nucleus | 18.98 | 21.85 |
| CDX90071 | Canola | nucleus | 18.18 | 21.79 |
| CDX84872 | Canola | nucleus | 19.79 | 21.7 |
| CDX71667 | Canola | nucleus | 20.59 | 21.45 |
| CDY34028 | Canola | nucleus | 19.79 | 21.26 |
| CDY06881 | Canola | nucleus | 20.59 | 21.21 |
| CDX79888 | Canola | nucleus | 20.86 | 21.2 |
| CDY47656 | Canola | nucleus | 18.18 | 20.99 |
| CDY53504 | Canola | nucleus | 20.59 | 20.81 |
| CDY14818 | Canola | nucleus | 20.32 | 20.71 |
| CDY38043 | Canola | nucleus | 18.18 | 20.3 |
| CDX67715 | Canola | nucleus | 16.84 | 19.94 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.53 | 3.45 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078FS87 | UniProt:A0A078FS87 | EnsemblPlants:CDY15712 | ProteinID:CDY15712 |
| ProteinID:CDY15712.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00089936001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom |
| InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EDBD7D | SEG:seg | : | : |
Description
BnaA07g08830DBnaA07g08830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FS87]
Coordinates
chrLK032056:+:704636..706668
Molecular Weight (calculated)
41579.5 Da
IEP (calculated)
7.987
GRAVY (calculated)
-0.680
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCNMVSPMW DWEHLIIPNL SKTETDKKQP STTDWDIEKG EGIESILFPS FTGSSSTTGF LSSQLTSTNS SSPKLKSSLG DFDQVKASTA LQVVSAESDL
101: CLKLGKRSYS DEETWGRNNN NDISAAVSVK LLTPPSVVAL KKSKSSCGQS MQVPRCQIDG CELDLSSAKD YHRKHRVCES HSKSPVVTVG GFERRFCQQC
201: SRLHAVSEFD EKKRSCRKRL SHHNARRRKP QGMFPLNPER VYNGRQHTNM LWNELSLNTG SEEKYAWGTT TYETKPTQME SGFTLNFQRG SGAEEQQVFA
301: SSNLSFSAYQ TSAGKSNVQL PSKGVGEYSG GLYETQDFYS ALSLLSTSSD SHGTKHHPMV ESQPIHGIFP THFL
101: CLKLGKRSYS DEETWGRNNN NDISAAVSVK LLTPPSVVAL KKSKSSCGQS MQVPRCQIDG CELDLSSAKD YHRKHRVCES HSKSPVVTVG GFERRFCQQC
201: SRLHAVSEFD EKKRSCRKRL SHHNARRRKP QGMFPLNPER VYNGRQHTNM LWNELSLNTG SEEKYAWGTT TYETKPTQME SGFTLNFQRG SGAEEQQVFA
301: SSNLSFSAYQ TSAGKSNVQL PSKGVGEYSG GLYETQDFYS ALSLLSTSSD SHGTKHHPMV ESQPIHGIFP THFL
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
Arabidopsis Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.