Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013465_P001 | |
| Zm00001d033680_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04495 | Sorghum | nucleus | 67.84 | 68.12 |
| Os02t0139400-01 | Rice | nucleus | 33.61 | 57.45 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 62.66 | 56.87 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 52.7 | 53.7 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 52.7 | 53.7 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 51.66 | 52.42 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 51.87 | 49.31 |
| Zm00001d014698_P001 | Maize | nucleus | 41.08 | 45.1 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 32.37 | 36.03 |
| Zm00001d053775_P001 | Maize | nucleus | 24.48 | 35.65 |
| Zm00001d015410_P002 | Maize | nucleus | 23.86 | 34.64 |
| KRG97402 | Soybean | nucleus | 30.08 | 33.49 |
| CDY03913 | Canola | nucleus | 25.73 | 33.42 |
| Bra033671.1-P | Field mustard | nucleus | 24.9 | 33.15 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 32.78 | 33.12 |
| KRH31506 | Soybean | nucleus | 30.29 | 32.96 |
| CDY43604 | Canola | nucleus | 25.73 | 32.21 |
| Bra027478.1-P | Field mustard | nucleus | 25.93 | 32.05 |
| CDY32959 | Canola | nucleus | 25.93 | 32.05 |
| AT5G43270.1 | Thale cress | nucleus | 27.8 | 31.98 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 30.71 | 31.83 |
| AT1G27370.1 | Thale cress | nucleus | 26.14 | 31.82 |
| Bra030040.1-P | Field mustard | nucleus | 25.73 | 31.79 |
| Solyc04g045560.2.1 | Tomato | nucleus | 23.03 | 31.71 |
| CDY15713 | Canola | nucleus | 25.52 | 31.54 |
| CDY27611 | Canola | nucleus | 23.86 | 31.51 |
| PGSC0003DMT400068752 | Potato | nucleus | 25.1 | 31.43 |
| CDX84928 | Canola | nucleus | 23.65 | 31.32 |
| Bra032822.1-P | Field mustard | nucleus | 23.65 | 31.23 |
| CDY27612 | Canola | nucleus | 20.95 | 30.7 |
| PGSC0003DMT400084734 | Potato | nucleus | 29.46 | 30.54 |
| AT1G27360.1 | Thale cress | nucleus | 24.9 | 30.53 |
| Bra032823.1-P | Field mustard | nucleus | 20.75 | 30.49 |
| Solyc05g015510.2.1 | Tomato | nucleus | 29.25 | 30.45 |
| CDY03914 | Canola | nucleus | 23.44 | 30.38 |
| CDY67700 | Canola | nucleus | 21.58 | 30.06 |
| CDY15712 | Canola | nucleus | 23.24 | 29.95 |
| Bra030041.1-P | Field mustard | nucleus | 23.24 | 29.95 |
| CDX84927 | Canola | nucleus | 22.2 | 29.16 |
| Bra010949.1-P | Field mustard | nucleus | 21.78 | 28.69 |
| CDY11816 | Canola | nucleus | 21.58 | 28.49 |
| CDY22356 | Canola | nucleus | 28.01 | 26.01 |
| Zm00001d006451_P001 | Maize | mitochondrion | 13.69 | 25.98 |
| CDY47812 | Canola | nucleus | 27.8 | 25.97 |
| Zm00001d021573_P001 | Maize | mitochondrion | 10.79 | 25.24 |
| Zm00001d020941_P001 | Maize | nucleus | 18.88 | 24.07 |
| Zm00001d006028_P001 | Maize | nucleus | 18.26 | 22.98 |
| Zm00001d012015_P001 | Maize | nucleus | 17.43 | 22.4 |
| Zm00001d002005_P001 | Maize | nucleus | 18.26 | 22.06 |
| Zm00001d042319_P001 | Maize | nucleus | 18.46 | 21.76 |
| Zm00001d006091_P001 | Maize | nucleus | 19.09 | 21.75 |
| Zm00001d052890_P001 | Maize | nucleus | 18.26 | 21.57 |
| Zm00001d026491_P001 | Maize | nucleus | 17.43 | 21.21 |
| Zm00001d049824_P002 | Maize | nucleus | 18.88 | 20.92 |
| Zm00001d021056_P001 | Maize | nucleus | 20.12 | 20.86 |
| Zm00001d031451_P001 | Maize | nucleus | 17.43 | 20.84 |
| Zm00001d049822_P001 | Maize | nucleus | 18.67 | 20.83 |
| Zm00001d026175_P001 | Maize | nucleus | 16.6 | 20.05 |
| Zm00001d053756_P001 | Maize | nucleus | 15.15 | 17.98 |
| Zm00001d036692_P001 | Maize | nucleus | 16.18 | 17.97 |
| Zm00001d015451_P001 | Maize | nucleus | 14.94 | 16.33 |
| Zm00001d046906_P001 | Maize | nucleus | 14.32 | 16.27 |
Protein Annotations
| EntrezGene:100382490 | MapMan:15.5.18 | Gene3D:4.10.1100.10 | ProteinID:AQK60654.1 | ProteinID:AQK60656.1 | ProteinID:AQK60658.1 |
| ProteinID:AQK60660.1 | EMBL:BT064536 | EMBL:BT064560 | UniProt:C0P8B7 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 | EMBL:KJ727943 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF24 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI00018DFE31 | EnsemblPlantsGene:Zm00001d053890 | EnsemblPlants:Zm00001d053890_P003 | EnsemblPlants:Zm00001d053890_T003 | SEG:seg | : |
Description
SBP-transcription factor 20Squamosa promoter-binding-like protein 2
Coordinates
chr4:-:243050411..243053629
Molecular Weight (calculated)
50726.3 Da
IEP (calculated)
8.976
GRAVY (calculated)
-0.532
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFGMDMDW NQKASVLLWD WENLPPAAAN GSESHRTTAA APQFAGLEAT GHEPAPSSVS SSIHSLPSAK GNKNKNNMEL ISFAPAKAPD KDTGSVLSSG
101: EPVVLGLKLG KRTYFEDGCG LGQSGKSSAA LGTASAATPP GPAKKAKAAA AAPTAQQQKS YCQVEGCRTD LSSAKDYHRK HRVCEPHSKA PKVVVAGLER
201: RFCQQCSRFH GLAEFDQKKK SCRRRLNDHN ARRRKPQPEA LPFGSSRLSA MFYDTRRQAS LLFGEGPYGQ MRSCASSWWD SPGAGGGGFK FAETRGAPWL
301: KPARAAADGL LPLSGQQQQQ VWNDSIPHVA HQEDFDGFTV TAFKGISPKT LDHQGAGVEA CAAVSSPDGA PDLQRALSLL SNSPAGGGGT NTNHPPPPPA
401: AELHHHRAAP SSCLAAGSVS VLQEASSPGL WQDGGGSAAL GHHAHARLQA LDAAMATAQE LLQLPRPPPS YGGSSSHYDL MR
101: EPVVLGLKLG KRTYFEDGCG LGQSGKSSAA LGTASAATPP GPAKKAKAAA AAPTAQQQKS YCQVEGCRTD LSSAKDYHRK HRVCEPHSKA PKVVVAGLER
201: RFCQQCSRFH GLAEFDQKKK SCRRRLNDHN ARRRKPQPEA LPFGSSRLSA MFYDTRRQAS LLFGEGPYGQ MRSCASSWWD SPGAGGGGFK FAETRGAPWL
301: KPARAAADGL LPLSGQQQQQ VWNDSIPHVA HQEDFDGFTV TAFKGISPKT LDHQGAGVEA CAAVSSPDGA PDLQRALSLL SNSPAGGGGT NTNHPPPPPA
401: AELHHHRAAP SSCLAAGSVS VLQEASSPGL WQDGGGSAAL GHHAHARLQA LDAAMATAQE LLQLPRPPPS YGGSSSHYDL MR
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
Arabidopsis Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.