Factsheet for Zm00001d046906_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88765	Sorghum	nucleus	87.5	83.56
Zm00001d036692_P001	Maize	nucleus	80.42	78.57
TraesCS7D01G482400.1	Wheat	nucleus	62.03	67.78
TraesCS7D01G482300.1	Wheat	nucleus	50.24	67.19
TraesCS7A01G495100.1	Wheat	nucleus	65.57	66.35
TraesCS7A01G495000.1	Wheat	nucleus	63.44	66.26
TraesCS7D01G482500.1	Wheat	nucleus	64.39	65.62
TraesCS7B01G402300.1	Wheat	nucleus	60.14	65.38
Os06t0659100-00	Rice	nucleus	65.09	64.79
TraesCS7B01G402200.1	Wheat	nucleus	63.68	64.75
TraesCS7A01G494900.1	Wheat	nucleus	60.14	64.72
TraesCS7B01G402400.1	Wheat	nucleus	56.84	60.1
TraesCS7D01G482200.1	Wheat	nucleus	56.37	58.58
TraesCS7A01G494800.1	Wheat	nucleus	53.07	56.39
HORVU7Hr1G110980.3	Barley	nucleus, plastid	58.73	55.46
Zm00001d015451_P001	Maize	nucleus	46.7	44.9
Bra032662.1-P	Field mustard	nucleus	16.04	43.04
Zm00001d053756_P001	Maize	nucleus	40.57	42.36
GSMUA_Achr3P00810_001	Banana	nucleus	23.11	38.43
GSMUA_Achr10P...	Banana	nucleus	20.05	37.28
GSMUA_Achr4P20590_001	Banana	nucleus	23.35	36.4
GSMUA_Achr7P05010_001	Banana	nucleus	22.64	35.04
VIT_15s0021g02300.t01	Wine grape	nucleus	22.41	31.25
PGSC0003DMT400066955	Potato	nucleus	21.93	30.79
Solyc01g090730.2.1	Tomato	nucleus	21.7	30.77
KRH75288	Soybean	nucleus	20.75	30.66
PGSC0003DMT400074976	Potato	nucleus	20.99	30.38
Solyc10g018780.1.1	Tomato	nucleus	20.75	30.03
GSMUA_Achr7P08750_001	Banana	nucleus	25.0	29.94
KRH66611	Soybean	nucleus	23.58	29.76
CDX90071	Canola	nucleus	21.7	29.49
KRH48747	Soybean	nucleus	23.35	29.29
Bra033221.1-P	Field mustard	nucleus	22.64	29.27
CDY15132	Canola	nucleus	15.8	28.76
Zm00001d021573_P001	Maize	mitochondrion	13.92	28.64
CDY38043	Canola	nucleus	22.41	28.36
AT1G02065.1	Thale cress	nucleus	22.17	28.23
Zm00001d006451_P001	Maize	mitochondrion	16.04	26.77
KRH07602	Soybean	nucleus	13.44	26.39
Zm00001d002005_P001	Maize	nucleus	24.06	25.56
Zm00001d026491_P001	Maize	nucleus	23.35	25.0
Zm00001d006091_P001	Maize	nucleus	20.75	20.8
Zm00001d012015_P001	Maize	nucleus	18.4	20.8
Zm00001d015410_P002	Maize	nucleus	16.04	20.48
Zm00001d042319_P001	Maize	nucleus	19.1	19.8
Zm00001d053775_P001	Maize	nucleus	15.33	19.64
Zm00001d006028_P001	Maize	nucleus	17.45	19.32
Zm00001d031451_P001	Maize	nucleus	18.16	19.11
Zm00001d020941_P001	Maize	nucleus	16.98	19.05
Zm00001d026175_P001	Maize	nucleus	17.69	18.8
Zm00001d021056_P001	Maize	nucleus	20.52	18.71
Zm00001d052890_P001	Maize	nucleus	17.92	18.63
Zm00001d049822_P001	Maize	nucleus	18.63	18.29
Zm00001d049824_P002	Maize	nucleus	18.63	18.16
Zm00001d014698_P001	Maize	nucleus	17.45	16.86
Zm00001d053890_P003	Maize	nucleus	16.27	14.32
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	17.45	13.94

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:AQL05173.1	UniProt:B4F9Z9	EMBL:BT033937	EMBL:BT034298
EMBL:BT065712	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893
PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF34	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	UniParc:UPI00017B60E7	EnsemblPlantsGene:Zm00001d046906	EnsemblPlants:Zm00001d046906_P001	EnsemblPlants:Zm00001d046906_T001	SEG:seg

Description

Squamosa promoter-binding-like protein 13A

Coordinates

chr9:-:109930589..109934102

Molecular Weight (calculated)

45722.9 Da

IEP (calculated)

8.885

GRAVY (calculated)

-0.657

Length

424 amino acids

Sequence
(BLAST)

001: MMSGRLNAAT PASPGDDFSF APMQMPPPPP YVGFEHGGGG QRGAGAMQAQ QHHLYDGLDF ASALQFQQEA SSHSHHHQLL TLPSSLGPMA PPMPMPMPMP
101: LPMQMPVPGD HVYHPALGTM VKREGGGADG GRIGLNLGRR TYFSPGDMLA VDRLLMRSRL GGVFGLGFGG AHQHQVPRCQ AEGCKADLSG AKHYHRRHKV
201: CEYHAKASVV AANGKQQRFC QQCSRFHVLS EFDEVKRSCR KRLAEHNRRR RKPATTASSK DAASPPAANK KTNGGSITCS YSTENKNDDL SCRAKSTMSS
301: NTSSVISCQL DQPGNKHQLA RPTLTLGASQ DNKDHQQQLS TMLHVQAAGG YHHQEQQHFI TSLQVHNNGG SGNNNNNNII LSCSSVCSSL PPPPSAPNGE
401: VSDQNTAANN GNGNMHNLFE VDFM

Best Arabidopsis Sequence Match ( AT1G02065.1 )
(BLAST)

001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG

Arabidopsis Description

SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.