Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G482500.1 | Wheat | nucleus | 95.2 | 95.43 |
| TraesCS7A01G495100.1 | Wheat | nucleus | 93.29 | 92.84 |
| TraesCS7B01G402300.1 | Wheat | nucleus | 78.42 | 83.85 |
| TraesCS7B01G402400.1 | Wheat | nucleus | 74.82 | 77.81 |
| Os06t0659100-00 | Rice | nucleus | 67.39 | 65.96 |
| EER88765 | Sorghum | nucleus | 68.35 | 64.19 |
| Zm00001d046906_P001 | Maize | nucleus | 64.75 | 63.68 |
| Zm00001d036692_P001 | Maize | nucleus | 64.51 | 61.98 |
| TraesCS6B01G180300.1 | Wheat | nucleus | 47.72 | 45.02 |
| Bra032662.1-P | Field mustard | nucleus | 16.55 | 43.67 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 24.7 | 37.87 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 23.02 | 37.65 |
| GSMUA_Achr10P... | Banana | nucleus | 19.66 | 35.96 |
| TraesCS2B01G250900.1 | Wheat | nucleus | 16.55 | 35.94 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 23.5 | 35.77 |
| PGSC0003DMT400074976 | Potato | nucleus | 22.3 | 31.74 |
| Solyc10g018780.1.1 | Tomato | nucleus | 22.06 | 31.4 |
| KRH75288 | Soybean | nucleus | 21.58 | 31.36 |
| VIT_15s0021g02300.t01 | Wine grape | nucleus | 22.78 | 31.25 |
| PGSC0003DMT400066955 | Potato | nucleus | 22.3 | 30.79 |
| Solyc01g090730.2.1 | Tomato | nucleus | 22.06 | 30.77 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 25.66 | 30.23 |
| KRH66611 | Soybean | nucleus | 23.98 | 29.76 |
| KRH48747 | Soybean | nucleus | 23.98 | 29.59 |
| CDX90071 | Canola | nucleus | 22.06 | 29.49 |
| Bra033221.1-P | Field mustard | nucleus | 23.02 | 29.27 |
| CDY38043 | Canola | nucleus | 23.02 | 28.66 |
| AT1G02065.1 | Thale cress | nucleus | 22.78 | 28.53 |
| CDY15132 | Canola | nucleus | 15.11 | 27.04 |
| TraesCS2B01G530400.1 | Wheat | nucleus | 26.14 | 26.72 |
| KRH07602 | Soybean | nucleus | 13.43 | 25.93 |
| TraesCS5B01G265600.2 | Wheat | nucleus | 21.34 | 22.47 |
| TraesCS2B01G432700.1 | Wheat | nucleus | 18.94 | 22.38 |
| TraesCS3B01G468400.1 | Wheat | nucleus | 20.86 | 21.01 |
| TraesCS7B01G144900.1 | Wheat | nucleus | 19.18 | 20.73 |
| TraesCS7B01G158500.1 | Wheat | nucleus | 20.14 | 20.54 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 16.07 | 20.49 |
| TraesCS5B01G286000.1 | Wheat | nucleus | 20.38 | 19.63 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 19.66 | 17.34 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G402200.1 | EnsemblPlantsGene:TraesCS7B01G402200 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR004333 |
| InterPro:IPR036893 | InterPro:SBP_dom | InterPro:SBP_sf | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF34 | PFAM:PF03110 |
| PFscan:PS51141 | SEG:seg | SUPFAM:SSF103612 | MapMan:15.5.18 | : | : |
Description
No Description!
Coordinates
chr7B:+:668907244..668914666
Molecular Weight (calculated)
44249.0 Da
IEP (calculated)
8.961
GRAVY (calculated)
-0.617
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSGGRMNAA ASDDFPFAAM QQPPYVSFEH AGMVQAGGGG GGGQRHQGAM MYDNFDFAAA AAAFGQFQDA PHHQMLALPP NGGGAGGLLP MAPPPMPGMQ
101: LQMPPMGMHG HGDVYPALGM VKREGGAGAG DAGRIGLNLG RRTYFSPGDM MAVDRLLMRS RLGGVFGLGF GGAHHQPPRC QAEGCKADLS GAKHYHRRHK
201: VCEYHAKASL VAAAGKQQRF CQQCSRTHVL TEFDESKRSC RKRLAEHNRR RRKPASSSTT ATSKDSAPPS KKPNPGAISS SYAADNNNLS ATKSNISSNT
301: SAISCLQQHD QSKAAAAAAR PMTLTLGEPP EKDDHHRQLS NAMQLHNHHQ EQQHFITSLL QGSNNNSNIL SCSSVCSSGL PSAGAANGEV SDQNNNSNHG
401: AGNNNNNNMH LFEVDFM
101: LQMPPMGMHG HGDVYPALGM VKREGGAGAG DAGRIGLNLG RRTYFSPGDM MAVDRLLMRS RLGGVFGLGF GGAHHQPPRC QAEGCKADLS GAKHYHRRHK
201: VCEYHAKASL VAAAGKQQRF CQQCSRTHVL TEFDESKRSC RKRLAEHNRR RRKPASSSTT ATSKDSAPPS KKPNPGAISS SYAADNNNLS ATKSNISSNT
301: SAISCLQQHD QSKAAAAAAR PMTLTLGEPP EKDDHHRQLS NAMQLHNHHQ EQQHFITSLL QGSNNNSNIL SCSSVCSSGL PSAGAANGEV SDQNNNSNHG
401: AGNNNNNNMH LFEVDFM
001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
Arabidopsis Description
SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.