Factsheet for TraesCS6B01G183400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G271000.1
TraesCS4A01G466700.1
TraesCS4B01G043100.1
TraesCS4D01G040400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	TraesCS4A01G271000.1	AT1G14920.1	22942378
AT1G27360.1	TraesCS4A01G466700.1	AT1G14920.1	22942378
AT1G27360.1	TraesCS4B01G043100.1	AT1G14920.1	22942378
AT1G27360.1	TraesCS4D01G040400.1	AT1G14920.1	22942378
AT1G27360.1	TraesCS4A01G271000.1	AT2G01570.1	22942378
AT1G27360.1	TraesCS4A01G466700.1	AT2G01570.1	22942378
AT1G27360.1	TraesCS4B01G043100.1	AT2G01570.1	22942378
AT1G27360.1	TraesCS4D01G040400.1	AT2G01570.1	22942378
AT1G27370.1	TraesCS4A01G271000.1	AT1G14920.1	22942378
AT1G27370.1	TraesCS4A01G466700.1	AT1G14920.1	22942378
AT1G27370.1	TraesCS4B01G043100.1	AT1G14920.1	22942378
AT1G27370.1	TraesCS4D01G040400.1	AT1G14920.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G145200.1	Wheat	nucleus	96.64	97.23
TraesCS6A01G155300.1	Wheat	nucleus	97.25	96.95
HORVU6Hr1G031450.6	Barley	nucleus	96.02	96.32
EES04609	Sorghum	nucleus	71.87	69.73
Zm00001d053775_P001	Maize	nucleus	68.81	67.98
Zm00001d015410_P002	Maize	nucleus	66.36	65.36
Os06t0663500-00	Rice	nucleus	52.29	49.85
TraesCS2B01G250900.1	Wheat	nucleus	18.65	31.77
KRG97402	Soybean	nucleus	38.84	29.33
KRH31506	Soybean	nucleus	38.84	28.67
GSMUA_Achr5P21990_001	Banana	nucleus	37.61	28.41
VIT_01s0010g03710.t01	Wine grape	nucleus	41.28	28.3
Solyc04g045560.2.1	Tomato	nucleus	29.97	28.0
VIT_11s0065g00170.t01	Wine grape	nucleus	39.76	27.96
PGSC0003DMT400068752	Potato	nucleus	32.42	27.53
Solyc05g015510.2.1	Tomato	nucleus	37.61	26.57
Bra033671.1-P	Field mustard	nucleus	29.36	26.52
PGSC0003DMT400084734	Potato	nucleus	37.31	26.24
TraesCS6B01G138400.1	Wheat	nucleus	37.0	25.58
CDY43604	Canola	nucleus	29.97	25.45
CDY32959	Canola	nucleus	30.28	25.38
Bra027478.1-P	Field mustard	nucleus	30.28	25.38
CDY03913	Canola	nucleus	28.75	25.34
Bra032823.1-P	Field mustard	nucleus	25.38	25.3
AT5G43270.1	Thale cress	nucleus	32.42	25.3
CDX84928	Canola	nucleus	28.13	25.27
CDY27612	Canola	nucleus	25.38	25.23
CDY27611	Canola	nucleus	28.13	25.21
Bra032822.1-P	Field mustard	nucleus	28.13	25.21
Bra030040.1-P	Field mustard	nucleus	29.36	24.62
CDX84927	Canola	nucleus	27.52	24.52
CDY03914	Canola	nucleus	27.83	24.46
CDY15713	Canola	nucleus	29.05	24.36
Bra030041.1-P	Field mustard	nucleus	27.83	24.33
CDY15712	Canola	nucleus	27.83	24.33
CDY67700	Canola	nucleus	25.38	23.99
AT1G27370.1	Thale cress	nucleus	28.75	23.74
AT1G27360.1	Thale cress	nucleus	28.13	23.41
Bra010949.1-P	Field mustard	nucleus	25.69	22.95
CDY11816	Canola	nucleus	25.38	22.74
TraesCS2B01G432700.1	Wheat	nucleus	23.85	22.1
CDY22356	Canola	nucleus	33.33	21.0
TraesCS5B01G265600.2	Wheat	nucleus	25.38	20.96
TraesCS5B01G286000.1	Wheat	nucleus	27.52	20.79
TraesCS7B01G158500.1	Wheat	nucleus	25.99	20.78
TraesCS7B01G144900.1	Wheat	nucleus	24.46	20.73
CDY47812	Canola	nucleus	32.42	20.54
TraesCS3B01G468400.1	Wheat	nucleus	25.99	20.53
TraesCS2B01G530400.1	Wheat	nucleus	23.85	19.12
TraesCS7B01G402300.1	Wheat	nucleus	21.41	17.95
TraesCS7B01G402400.1	Wheat	nucleus	21.1	17.21
TraesCS7B01G402200.1	Wheat	nucleus	20.49	16.07
TraesCS6B01G180300.1	Wheat	nucleus	20.18	14.93

Protein Annotations

EnsemblPlants:TraesCS6B01G183400.1	EnsemblPlantsGene:TraesCS6B01G183400	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR004333
InterPro:IPR036893	InterPro:SBP_dom	InterPro:SBP_sf	PANTHER:PTHR31251	PANTHER:PTHR31251:SF7	PFAM:PF03110
PFscan:PS51141	SEG:seg	SUPFAM:SSF103612	MapMan:15.5.18	:	:

Description

No Description!

Coordinates

chr6B:-:204923870..204927712

Molecular Weight (calculated)

35319.6 Da

IEP (calculated)

9.475

GRAVY (calculated)

-0.664

Length

327 amino acids

Sequence
(BLAST)

001: MEWTAPKSTP LSPPHLLWDW GDAAAPGSSG EAAGRRGKEK RARGEGAGGG GGGGGGGVRC QVEGCGVELR DAKEYHRKHR VCEAHTKSPR VVVAGQERRF
101: CQQCSRFHGL SEFDQKKRSC RRRLSDHNAR RRKPQPDAFS FAPARLPSSL MFDDRRQISF VWNKDPLSHG RPFPCSPWDS PSDFKLPQVK EIREVSINGQ
201: VHFDKSHLPN AVPALSHDIP ELLPMKGPDA SVTASKLGGA PDLQRALSLL SASSCGLPDP VQQASCLVQF TGASQNSRGP SPHGGSPPSV SCAEGQPMAP
301: SPQFVRFTMD GASSGYESTF FGVNRMN

Best Arabidopsis Sequence Match ( AT5G43270.1 )
(BLAST)

001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN

Arabidopsis Description

SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.