Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_01s0011g05260.t01 | |
VIT_14s0006g00640.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_01s0010g03710.t01 | Wine grape | nucleus | 54.41 | 53.04 |
Os02t0139400-01 | Rice | nucleus | 28.6 | 47.16 |
GSMUA_Achr9P14160_001 | Banana | nucleus | 45.16 | 45.85 |
KRG97402 | Soybean | nucleus | 42.58 | 45.73 |
GSMUA_Achr4P12470_001 | Banana | nucleus | 34.41 | 45.71 |
GSMUA_Achr4P05720_001 | Banana | nucleus | 33.55 | 45.09 |
GSMUA_Achr9P23140_001 | Banana | nucleus | 40.22 | 44.95 |
KRH31506 | Soybean | nucleus | 42.58 | 44.7 |
GSMUA_Achr5P22630_001 | Banana | nucleus | 42.58 | 43.61 |
GSMUA_Achr3P05360_001 | Banana | nucleus | 43.44 | 43.53 |
GSMUA_Achr3P27750_001 | Banana | nucleus | 43.23 | 42.86 |
GSMUA_Achr5P21990_001 | Banana | nucleus | 39.78 | 42.73 |
GSMUA_Achr10P... | Banana | nucleus | 44.09 | 40.67 |
OQU77017 | Sorghum | nucleus | 37.63 | 39.77 |
TraesCS6B01G183400.1 | Wheat | nucleus | 27.96 | 39.76 |
GSMUA_Achr6P36010_001 | Banana | nucleus | 37.42 | 39.73 |
HORVU6Hr1G031450.6 | Barley | nucleus | 27.74 | 39.57 |
EES04609 | Sorghum | nucleus | 28.6 | 39.47 |
TraesCS6D01G145200.1 | Wheat | nucleus | 27.53 | 39.38 |
TraesCS6A01G155300.1 | Wheat | nucleus | 27.74 | 39.33 |
TraesCS6D01G098500.1 | Wheat | nucleus | 40.0 | 39.32 |
VIT_10s0003g00050.t01 | Wine grape | nucleus | 11.83 | 39.29 |
TraesCS6A01G110100.2 | Wheat | nucleus | 40.0 | 39.16 |
TraesCS6B01G138400.1 | Wheat | nucleus | 39.78 | 39.11 |
Zm00001d015410_P002 | Maize | nucleus | 27.31 | 38.25 |
CDY27611 | Canola | nucleus | 29.89 | 38.08 |
Zm00001d053775_P001 | Maize | nucleus | 27.1 | 38.07 |
Zm00001d014698_P001 | Maize | nucleus | 35.91 | 38.04 |
Os06t0703500-02 | Rice | nucleus | 38.71 | 37.89 |
Bra032822.1-P | Field mustard | nucleus | 29.46 | 37.53 |
Os02t0174100-02 | Rice | nucleus | 20.22 | 37.45 |
CDX84928 | Canola | nucleus | 29.25 | 37.36 |
HORVU6Hr1G019700.3 | Barley | nucleus | 40.43 | 37.08 |
CDY27612 | Canola | nucleus | 26.02 | 36.78 |
Bra030040.1-P | Field mustard | nucleus | 30.75 | 36.67 |
CDY03913 | Canola | nucleus | 29.25 | 36.66 |
Bra032823.1-P | Field mustard | nucleus | 25.81 | 36.59 |
CDY15713 | Canola | nucleus | 30.54 | 36.41 |
EES04495 | Sorghum | nucleus | 37.42 | 36.25 |
CDX84927 | Canola | nucleus | 28.6 | 36.24 |
GSMUA_Achr10P... | Banana | nucleus | 37.85 | 36.14 |
CDY67700 | Canola | nucleus | 26.88 | 36.13 |
AT1G27370.1 | Thale cress | nucleus | 30.54 | 35.86 |
CDY15712 | Canola | nucleus | 28.6 | 35.56 |
Bra030041.1-P | Field mustard | nucleus | 28.39 | 35.29 |
Bra010949.1-P | Field mustard | nucleus | 27.74 | 35.25 |
GSMUA_Achr8P23820_001 | Banana | nucleus | 39.78 | 35.1 |
CDY03914 | Canola | nucleus | 27.96 | 34.95 |
CDY11816 | Canola | nucleus | 27.1 | 34.52 |
Os06t0663500-00 | Rice | nucleus | 25.16 | 34.11 |
AT1G27360.1 | Thale cress | nucleus | 28.17 | 33.33 |
VIT_12s0028g03350.t01 | Wine grape | nucleus | 11.83 | 32.54 |
Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 35.7 | 31.26 |
Zm00001d053890_P003 | Maize | nucleus | 31.83 | 30.71 |
VIT_08s0007g06270.t01 | Wine grape | nucleus | 24.52 | 30.08 |
VIT_04s0210g00170.t01 | Wine grape | nucleus | 12.9 | 28.99 |
VIT_19s0014g02350.t01 | Wine grape | nucleus | 12.47 | 28.43 |
VIT_15s0021g02300.t01 | Wine grape | nucleus | 17.2 | 26.32 |
VIT_01s0010g03910.t01 | Wine grape | nucleus | 20.0 | 23.91 |
VIT_14s0068g01780.t01 | Wine grape | nucleus | 19.35 | 23.81 |
VIT_15s0021g02290.t01 | Wine grape | nucleus | 19.35 | 22.56 |
VIT_17s0000g01260.t01 | Wine grape | nucleus | 17.63 | 20.45 |
VIT_17s0000g05020.t01 | Wine grape | nucleus | 22.15 | 18.49 |
VIT_01s0011g00130.t01 | Wine grape | nucleus | 17.42 | 15.98 |
Protein Annotations
EntrezGene:100246757 | wikigene:100246757 | MapMan:15.5.18 | Gene3D:4.10.1100.10 | ProteinID:ADG36381 | ProteinID:ADG36381.1 |
ProteinID:CCB48909 | ProteinID:CCB48909.1 | UniProt:F6H9P0 | EMBL:FN595502 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0046872 | EMBL:HM018601 | InterPro:IPR004333 | InterPro:IPR036893 | EntrezGene:LOC100246757 | wikigene:LOC100246757 |
PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF12 | InterPro:SBP_dom | InterPro:SBP_sf |
SUPFAM:SSF103612 | TIGR:TC63294 | UniParc:UPI00019843C9 | ArrayExpress:VIT_11s0065g00170 | EnsemblPlantsGene:VIT_11s0065g00170 | EnsemblPlants:VIT_11s0065g00170.t01 |
unigene:Vvi.8167 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr11:-:13588641..13607268
Molecular Weight (calculated)
51453.9 Da
IEP (calculated)
7.935
GRAVY (calculated)
-0.697
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MEWNLRTPSE WDWETLTAFN TKAFEFPGRV QLSNHDIEVD GGVDNGSVYS SGGGGFSGSD LGHGSSSRSS ISVSGDSSLK EGIKKFRNVE DFHKDFSENK
101: ELIRVGSSGN CPTVGTSDGS GEAMIGLKLG KRTYFEDVCA ASTAKTTTSS VNPASSVSAT KRFRTSYQSS QTPRCQVEGC NLDLKSAKDY HRRHRICENH
201: SKSPKVIVAG LERRFCQQCS RFHELTEFDD KKRSCRRRLN DHNARRRRPH PESIQFSSGR LPSSLYDGRQ QINLACNRLP IPVATPMWQN PCSFKDTQTG
301: GSLIRPVKAV GIDKQLHLPT DEMPDAISML HGNSERMLSF DGSTPRVLNQ GLEASAIASN SNVAPDFRRA LSLLSTNSWG LNDPGPTSLD QLMHVNQTSM
401: AQPTMHAEPH NWALASSENM HVQQTPSETR GHSLDLHNNG SSMFQEFQLF KAPYESGCFY PNQIN
101: ELIRVGSSGN CPTVGTSDGS GEAMIGLKLG KRTYFEDVCA ASTAKTTTSS VNPASSVSAT KRFRTSYQSS QTPRCQVEGC NLDLKSAKDY HRRHRICENH
201: SKSPKVIVAG LERRFCQQCS RFHELTEFDD KKRSCRRRLN DHNARRRRPH PESIQFSSGR LPSSLYDGRQ QINLACNRLP IPVATPMWQN PCSFKDTQTG
301: GSLIRPVKAV GIDKQLHLPT DEMPDAISML HGNSERMLSF DGSTPRVLNQ GLEASAIASN SNVAPDFRRA LSLLSTNSWG LNDPGPTSLD QLMHVNQTSM
401: AQPTMHAEPH NWALASSENM HVQQTPSETR GHSLDLHNNG SSMFQEFQLF KAPYESGCFY PNQIN
001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
Arabidopsis Description
SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.