Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G27360.1 | Thale cress | nucleus | 75.51 | 76.08 |
| Bra030040.1-P | Field mustard | nucleus | 71.97 | 73.08 |
| CDY15713 | Canola | nucleus | 71.72 | 72.82 |
| CDY03913 | Canola | nucleus | 68.18 | 72.78 |
| Os02t0139400-01 | Rice | nucleus | 29.8 | 41.84 |
| AT2G33810.1 | Thale cress | nucleus | 13.13 | 39.69 |
| Os02t0174100-02 | Rice | nucleus | 22.73 | 35.86 |
| AT5G43270.1 | Thale cress | nucleus | 36.36 | 34.37 |
| KRG97402 | Soybean | nucleus | 36.87 | 33.72 |
| KRH31506 | Soybean | nucleus | 37.12 | 33.18 |
| AT1G53160.1 | Thale cress | nucleus | 14.14 | 32.18 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 35.86 | 30.54 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 31.82 | 30.29 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 34.85 | 30.13 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 35.61 | 29.81 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 35.61 | 29.81 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 26.26 | 29.71 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 32.32 | 29.22 |
| Zm00001d015410_P002 | Maize | nucleus | 24.49 | 29.22 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 33.33 | 29.07 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 34.85 | 29.05 |
| Zm00001d053775_P001 | Maize | nucleus | 24.24 | 29.0 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 23.99 | 28.96 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 23.74 | 28.92 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 25.25 | 28.9 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 33.84 | 28.88 |
| EES04609 | Sorghum | nucleus | 24.49 | 28.78 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 23.74 | 28.75 |
| EES04495 | Sorghum | nucleus | 34.6 | 28.54 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 23.48 | 28.53 |
| OQU77017 | Sorghum | nucleus | 31.31 | 28.18 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 30.81 | 28.18 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 35.86 | 28.01 |
| Os06t0703500-02 | Rice | nucleus | 33.59 | 28.0 |
| Os06t0663500-00 | Rice | nucleus | 24.24 | 27.99 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 32.83 | 27.72 |
| AT3G15270.1 | Thale cress | nucleus | 12.63 | 27.62 |
| Zm00001d014698_P001 | Maize | nucleus | 30.3 | 27.33 |
| GSMUA_Achr10P... | Banana | nucleus | 33.08 | 26.9 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 35.1 | 26.18 |
| Zm00001d053890_P003 | Maize | nucleus | 31.82 | 26.14 |
| GSMUA_Achr10P... | Banana | nucleus | 32.83 | 25.79 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 30.3 | 22.77 |
| AT1G02065.1 | Thale cress | nucleus | 18.69 | 22.22 |
| AT5G50570.2 | Thale cress | nucleus | 19.95 | 22.01 |
| AT5G50670.2 | Thale cress | nucleus | 19.95 | 22.01 |
| AT3G57920.1 | Thale cress | nucleus | 19.19 | 21.47 |
| AT2G42200.1 | Thale cress | nucleus | 20.2 | 21.33 |
| AT1G69170.1 | Thale cress | nucleus | 20.2 | 19.75 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | EntrezGene:839626 | UniProt:A0A178WJ37 | ProteinID:AAF99748.1 | ProteinID:AEE30814.1 |
| ProteinID:AEE30815.1 | ProteinID:AEE30816.1 | ProteinID:AEE30817.1 | EMBL:AJ011637 | ProteinID:ANM61026.1 | ProteinID:ANM61027.1 |
| ArrayExpress:AT1G27370 | EnsemblPlantsGene:AT1G27370 | RefSeq:AT1G27370 | TAIR:AT1G27370 | RefSeq:AT1G27370-TAIR-G | EnsemblPlants:AT1G27370.1 |
| TAIR:AT1G27370.1 | EMBL:AY074853 | EMBL:AY142028 | ProteinID:CAB56588.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010358 | GO:GO:0043565 |
| GO:GO:0045893 | GO:GO:0046872 | GO:GO:0048510 | InterPro:IPR004333 | InterPro:IPR036893 | RefSeq:NP_001031096.2 |
| RefSeq:NP_001077605.1 | RefSeq:NP_001319090.1 | RefSeq:NP_001323271.1 | RefSeq:NP_174057.2 | RefSeq:NP_973921.1 | ProteinID:OAP17483.1 |
| PFAM:PF03110 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF30 |
| UniProt:Q8S9L0 | InterPro:SBP_dom | InterPro:SBP_sf | Symbol:SPL10 | SUPFAM:SSF103612 | UniParc:UPI00000A22DA |
| SEG:seg | : | : | : | : | : |
Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
Coordinates
chr1:-:9505115..9508542
Molecular Weight (calculated)
44161.3 Da
IEP (calculated)
7.870
GRAVY (calculated)
-0.696
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.