Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24113 | Canola | nucleus | 70.69 | 76.4 |
| Bra039656.1-P | Field mustard | nucleus | 78.74 | 76.11 |
| CDY25876 | Canola | nucleus | 76.44 | 75.57 |
| CDY61210 | Canola | nucleus | 77.59 | 75.42 |
| Bra038101.1-P | Field mustard | nucleus | 76.44 | 72.68 |
| CDY50515 | Canola | nucleus | 65.52 | 72.61 |
| AT3G15270.1 | Thale cress | nucleus | 67.82 | 65.19 |
| Solyc10g009080.2.1 | Tomato | nucleus | 41.95 | 54.07 |
| AT2G33810.1 | Thale cress | nucleus | 40.23 | 53.44 |
| PGSC0003DMT400058753 | Potato | nucleus | 41.38 | 53.33 |
| VIT_10s0003g00050.t01 | Wine grape | nucleus | 42.53 | 52.86 |
| PGSC0003DMT400076399 | Potato | nucleus | 40.23 | 51.47 |
| Solyc02g077920.2.1 | Tomato | nucleus | 39.08 | 50.0 |
| KRH20415 | Soybean | nucleus | 34.48 | 42.25 |
| KRH21401 | Soybean | nucleus | 33.33 | 42.03 |
| KRH10909 | Soybean | nucleus | 33.33 | 42.03 |
| KRH50085 | Soybean | nucleus | 35.06 | 41.78 |
| Os07t0505200-01 | Rice | nucleus | 37.93 | 30.56 |
| EER97257 | Sorghum | nucleus | 37.36 | 30.23 |
| Zm00001d021573_P001 | Maize | mitochondrion | 32.18 | 27.18 |
| Zm00001d006451_P001 | Maize | mitochondrion | 38.51 | 26.38 |
| KXG36284 | Sorghum | nucleus | 32.18 | 25.69 |
| AT1G02065.1 | Thale cress | nucleus | 33.33 | 17.42 |
| AT3G57920.1 | Thale cress | nucleus | 34.48 | 16.95 |
| AT2G42200.1 | Thale cress | nucleus | 32.18 | 14.93 |
| AT1G27360.1 | Thale cress | nucleus | 32.18 | 14.25 |
| AT5G50670.2 | Thale cress | nucleus | 29.31 | 14.21 |
| AT5G50570.2 | Thale cress | nucleus | 29.31 | 14.21 |
| AT1G27370.1 | Thale cress | nucleus | 32.18 | 14.14 |
| AT1G69170.1 | Thale cress | nucleus | 32.18 | 13.83 |
| AT5G43270.1 | Thale cress | nucleus | 30.46 | 12.65 |
Protein Annotations
| MapMan:15.5.18 | PDB:1UL4 | Gene3D:4.10.1100.10 | EntrezGene:841749 | UniProt:A0A178WEY0 | ProteinID:AAF69527.1 |
| ProteinID:AEE32896.1 | ProteinID:AEE32897.1 | EMBL:AJ011631 | EMBL:AJ011632 | ArrayExpress:AT1G53160 | EnsemblPlantsGene:AT1G53160 |
| RefSeq:AT1G53160 | TAIR:AT1G53160 | RefSeq:AT1G53160-TAIR-G | EnsemblPlants:AT1G53160.1 | TAIR:AT1G53160.1 | EMBL:AY084902 |
| EMBL:BT002856 | EMBL:BT004391 | ProteinID:CAB56582.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 |
| GO:GO:0010321 | GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 | RefSeq:NP_175723.1 | RefSeq:NP_974014.1 |
| ProteinID:OAP16035.1 | PFAM:PF03110 | PIRSF:PIRSF037575 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0020148 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51141 | PANTHER:PTHR31251 |
| PANTHER:PTHR31251:SF64 | UniProt:Q9S7A9 | InterPro:SBP_dom | InterPro:SBP_fam | InterPro:SBP_sf | Symbol:SPL4 |
| SUPFAM:SSF103612 | UniParc:UPI000000BDFE | SEG:seg | : | : | : |
Description
SPL4Squamosa promoter-binding-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7A9]
Coordinates
chr1:+:19806263..19807705
Molecular Weight (calculated)
20120.8 Da
IEP (calculated)
10.138
GRAVY (calculated)
-1.202
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKRSQGQG YMKKKSYLVE EDMETDTDEE EEVGRDRVRG SRGSINRGGS LRLCQVDRCT ADMKEAKLYH RRHKVCEVHA KASSVFLSGL NQRFCQQCSR
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRVEMT LPMPNSSFKR PQIR
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRVEMT LPMPNSSFKR PQIR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.