Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G250900.1 | Wheat | nucleus | 62.96 | 70.83 |
| TraesCS2D01G232800.1 | Wheat | nucleus | 62.04 | 69.79 |
| TraesCS2A01G232400.1 | Wheat | nucleus | 62.04 | 69.79 |
| EER97257 | Sorghum | nucleus | 59.72 | 60.0 |
| Zm00001d006451_P001 | Maize | mitochondrion | 60.19 | 51.18 |
| HORVU2Hr1G048280.2 | Barley | plastid | 45.37 | 50.26 |
| GSMUA_Achr1P08440_001 | Banana | nucleus | 42.13 | 48.66 |
| AT2G33810.1 | Thale cress | nucleus | 28.7 | 47.33 |
| VIT_10s0003g00050.t01 | Wine grape | nucleus | 30.56 | 47.14 |
| KRH21401 | Soybean | nucleus | 30.09 | 47.1 |
| GSMUA_Achr4P23650_001 | Banana | nucleus | 40.74 | 47.06 |
| KRH10909 | Soybean | nucleus | 29.63 | 46.38 |
| KRH20415 | Soybean | nucleus | 30.09 | 45.77 |
| Bra005470.1-P | Field mustard | nucleus | 29.17 | 44.37 |
| KRH27270 | Soybean | nucleus | 37.96 | 43.85 |
| CDY17204 | Canola | nucleus | 28.7 | 43.66 |
| PGSC0003DMT400085174 | Potato | nucleus | 26.85 | 43.61 |
| CDY27935 | Canola | nucleus | 29.63 | 43.54 |
| KRH22053 | Soybean | nucleus | 37.5 | 43.32 |
| KRG88838 | Soybean | nucleus | 37.96 | 43.16 |
| KRH50085 | Soybean | nucleus | 29.17 | 43.15 |
| CDY24113 | Canola | nucleus | 31.94 | 42.86 |
| KRH55227 | Soybean | nucleus | 36.57 | 42.7 |
| Bra021880.1-P | Field mustard | nucleus | 27.78 | 42.55 |
| CDY57212 | Canola | nucleus | 27.78 | 42.55 |
| VIT_12s0028g03350.t01 | Wine grape | nucleus | 32.87 | 42.01 |
| CDY37684 | Canola | nucleus | 27.31 | 41.84 |
| GSMUA_Achr2P03070_001 | Banana | nucleus | 41.2 | 41.4 |
| CDY50515 | Canola | nucleus | 29.63 | 40.76 |
| VIT_19s0014g02350.t01 | Wine grape | nucleus | 38.43 | 40.69 |
| Solyc07g062980.2.1 | Tomato | nucleus | 24.54 | 40.15 |
| KRH22367 | Soybean | nucleus | 29.17 | 39.87 |
| Bra039656.1-P | Field mustard | nucleus | 32.41 | 38.89 |
| CDY25876 | Canola | nucleus | 31.02 | 38.07 |
| CDY61210 | Canola | nucleus | 31.48 | 37.99 |
| AT1G53160.1 | Thale cress | nucleus | 30.56 | 37.93 |
| Bra038101.1-P | Field mustard | nucleus | 31.94 | 37.7 |
| CDX97645 | Canola | nucleus | 31.02 | 37.43 |
| Bra027265.1-P | Field mustard | nucleus | 31.02 | 37.43 |
| AT3G15270.1 | Thale cress | nucleus | 31.02 | 37.02 |
| CDX98540 | Canola | nucleus | 30.56 | 36.87 |
| Bra021094.1-P | Field mustard | nucleus | 28.24 | 34.66 |
| CDY20128 | Canola | nucleus | 27.78 | 34.09 |
| CDY32310 | Canola | nucleus | 27.78 | 34.09 |
| CDX79544 | Canola | nucleus | 28.7 | 33.16 |
| Zm00001d021573_P001 | Maize | mitochondrion | 29.63 | 31.07 |
| KXG36284 | Sorghum | nucleus | 30.09 | 29.82 |
| Os02t0174100-02 | Rice | nucleus | 27.31 | 23.51 |
| Os02t0139400-01 | Rice | nucleus | 27.78 | 21.28 |
| Os08t0509600-01 | Rice | nucleus | 34.72 | 17.99 |
| Os09t0491532-01 | Rice | nucleus | 26.39 | 17.65 |
| Os04t0551500-01 | Rice | nucleus | 29.17 | 17.5 |
| Os06t0659100-00 | Rice | nucleus | 31.94 | 16.2 |
| Os01t0922600-01 | Rice | nucleus | 23.15 | 16.08 |
| Os04t0656500-01 | Rice | nucleus | 30.56 | 15.87 |
| Os06t0663500-00 | Rice | nucleus | 25.0 | 15.74 |
| Os02t0177300-00 | Rice | nucleus | 31.48 | 14.53 |
| Os08t0531600-01 | Rice | nucleus | 30.56 | 14.51 |
| Os09t0507100-00 | Rice | nucleus | 31.48 | 14.41 |
| Os06t0703500-02 | Rice | nucleus | 25.93 | 11.79 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | EntrezGene:9270355 | EMBL:AP014963 | ProteinID:BAC84006.1 | ProteinID:BAF21646.1 |
| ProteinID:BAH93945.1 | UniProt:C7J4X6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 |
| InterPro:IPR004333 | InterPro:IPR036893 | EMBL:KT899581 | EnsemblPlantsGene:Os07g0505200 | EnsemblPlants:Os07t0505200-01 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF60 | UniProt:Q6Z461 | InterPro:SBP_dom | InterPro:SBP_sf |
| SUPFAM:SSF103612 | UniParc:UPI00001BF529 | RefSeq:XP_015645415.1 | SEG:seg | : | : |
Description
RICE SQUAMOSA PROMOTER-BINDING-LIKE 13, Squamosa promoter-binding-like protein 13Plant-specific transcription factor, Control of grain size (Os07t0505200-01)
Coordinates
chr7:-:19099679..19103337
Molecular Weight (calculated)
22045.5 Da
IEP (calculated)
10.836
GRAVY (calculated)
-0.679
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRKDKARKN FSSSSSSSAA SMAALAAAAA AGDGGAALPS PMEEDKKPRL VASSLAPVAG GGGGGSSSSA AVAAGASSSS SSSSVAAAAR RGAGRAGGGA
101: PSGGGGGPRC QVERCGVDLS EAGRYNRRHK VCQTHSKEPV VLVAGLRQRF CQQCSRFHEL TEFDDAKRSC RRRLAGHNER RRKSAADTAH GENCRHADQD
201: AGRSHQGTGN PPFQIR
101: PSGGGGGPRC QVERCGVDLS EAGRYNRRHK VCQTHSKEPV VLVAGLRQRF CQQCSRFHEL TEFDDAKRSC RRRLAGHNER RRKSAADTAH GENCRHADQD
201: AGRSHQGTGN PPFQIR
001: MEGKRSQGQG YMKKKSYLVE EDMETDTDEE EEVGRDRVRG SRGSINRGGS LRLCQVDRCT ADMKEAKLYH RRHKVCEVHA KASSVFLSGL NQRFCQQCSR
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRIRVR SVTYPKAQGN Y
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRIRVR SVTYPKAQGN Y
Arabidopsis Description
SPL4Squamosa promoter-binding-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.