Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g062980.2.1 | Tomato | nucleus | 88.72 | 89.39 |
| PGSC0003DMT400058753 | Potato | nucleus | 40.6 | 40.0 |
| PGSC0003DMT400076399 | Potato | nucleus | 39.85 | 38.97 |
| PGSC0003DMT400082789 | Potato | nucleus | 43.61 | 35.15 |
| EER97257 | Sorghum | nucleus | 45.11 | 27.91 |
| Os07t0505200-01 | Rice | nucleus | 43.61 | 26.85 |
| Zm00001d021573_P001 | Maize | mitochondrion | 39.85 | 25.73 |
| KXG36284 | Sorghum | nucleus | 39.85 | 24.31 |
| Zm00001d006451_P001 | Maize | mitochondrion | 45.11 | 23.62 |
| PGSC0003DMT400074976 | Potato | nucleus | 36.84 | 16.72 |
| PGSC0003DMT400066955 | Potato | nucleus | 36.84 | 16.23 |
| PGSC0003DMT400056374 | Potato | nucleus | 37.59 | 15.67 |
| PGSC0003DMT400029751 | Potato | nucleus | 43.61 | 15.59 |
| PGSC0003DMT400068752 | Potato | nucleus | 33.83 | 11.69 |
| PGSC0003DMT400059813 | Potato | nucleus | 39.85 | 11.62 |
| PGSC0003DMT400084734 | Potato | nucleus | 35.34 | 10.11 |
| PGSC0003DMT400063046 | Potato | nucleus | 37.59 | 9.69 |
| PGSC0003DMT400072745 | Potato | nucleus | 40.6 | 9.68 |
Protein Annotations
| EntrezGene:102594116 | MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 |
| InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M1D8X0 | PFAM:PF03110 | EnsemblPlantsGene:PGSC0003DMG400034745 | PGSC:PGSC0003DMG400034745 |
| EnsemblPlants:PGSC0003DMT400085174 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom | InterPro:SBP_sf |
| SUPFAM:SSF103612 | UniParc:UPI000294DC37 | RefSeq:XP_006348264.1 | SEG:seg | : | : |
Description
SBP transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400034745]
Coordinates
chr7:-:53078927..53080283
Molecular Weight (calculated)
15112.2 Da
IEP (calculated)
9.448
GRAVY (calculated)
-0.705
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MANNDGGGGV GVVVQVKHYC QVEKCEVNLD DAKKYHKRHK VCQVHAKAPI VLLAGLRQRF CQQCSRFHEL SEFDGTKKSC RLRLDGHNKR RRKTPLAIEM
101: EDNQCRLING EASPHMDMTL SSRNTIHTAD ISR
101: EDNQCRLING EASPHMDMTL SSRNTIHTAD ISR
001: MSMRRSKAEG KRSLRELSEE EEEEEETEDE DTFEEEEALE KKQKGKATSS SGVCQVESCT ADMSKAKQYH KRHKVCQFHA KAPHVRISGL HQRFCQQCSR
101: FHALSEFDEA KRSCRRRLAG HNERRRKSTT D
101: FHALSEFDEA KRSCRRRLAG HNERRRKSTT D
Arabidopsis Description
SPL3Squamosa promoter-binding-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P93015]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.