Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g009080.2.1 | Tomato | nucleus | 91.11 | 91.11 |
| PGSC0003DMT400076399 | Potato | nucleus | 70.37 | 69.85 |
| AT2G33810.1 | Thale cress | nucleus | 59.26 | 61.07 |
| VIT_10s0003g00050.t01 | Wine grape | nucleus | 62.22 | 60.0 |
| Bra005470.1-P | Field mustard | nucleus | 60.0 | 57.04 |
| CDY17204 | Canola | nucleus | 58.52 | 55.63 |
| CDY27935 | Canola | nucleus | 60.0 | 55.1 |
| Bra021880.1-P | Field mustard | nucleus | 56.3 | 53.9 |
| CDY37684 | Canola | nucleus | 56.3 | 53.9 |
| CDY57212 | Canola | nucleus | 55.56 | 53.19 |
| KRH10909 | Soybean | nucleus | 49.63 | 48.55 |
| KRH21401 | Soybean | nucleus | 49.63 | 48.55 |
| CDY50515 | Canola | nucleus | 53.33 | 45.86 |
| KRH20415 | Soybean | nucleus | 48.15 | 45.77 |
| KRH50085 | Soybean | nucleus | 48.15 | 44.52 |
| CDY24113 | Canola | nucleus | 52.59 | 44.1 |
| PGSC0003DMT400082789 | Potato | nucleus | 51.11 | 41.82 |
| AT1G53160.1 | Thale cress | nucleus | 53.33 | 41.38 |
| CDY61210 | Canola | nucleus | 54.07 | 40.78 |
| PGSC0003DMT400085174 | Potato | nucleus | 40.0 | 40.6 |
| CDY25876 | Canola | nucleus | 52.59 | 40.34 |
| CDX79544 | Canola | nucleus | 55.56 | 40.11 |
| Bra039656.1-P | Field mustard | nucleus | 53.33 | 40.0 |
| Bra038101.1-P | Field mustard | nucleus | 54.07 | 39.89 |
| Bra021094.1-P | Field mustard | nucleus | 51.11 | 39.2 |
| CDY20128 | Canola | nucleus | 50.37 | 38.64 |
| CDY32310 | Canola | nucleus | 50.37 | 38.64 |
| AT3G15270.1 | Thale cress | nucleus | 51.11 | 38.12 |
| Bra027265.1-P | Field mustard | nucleus | 50.37 | 37.99 |
| CDX97645 | Canola | nucleus | 50.37 | 37.99 |
| CDX98540 | Canola | nucleus | 50.37 | 37.99 |
| PGSC0003DMT400074976 | Potato | nucleus | 45.93 | 21.16 |
| PGSC0003DMT400066955 | Potato | nucleus | 42.96 | 19.21 |
| PGSC0003DMT400056374 | Potato | nucleus | 38.52 | 16.3 |
| PGSC0003DMT400029751 | Potato | nucleus | 42.96 | 15.59 |
| PGSC0003DMT400068752 | Potato | nucleus | 37.04 | 12.99 |
| PGSC0003DMT400059813 | Potato | nucleus | 42.22 | 12.5 |
| PGSC0003DMT400084734 | Potato | nucleus | 38.52 | 11.18 |
| PGSC0003DMT400063046 | Potato | nucleus | 40.0 | 10.47 |
| PGSC0003DMT400072745 | Potato | nucleus | 42.96 | 10.39 |
Protein Annotations
| EntrezGene:102581816 | MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0046872 |
| InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M1C389 | PFAM:PF03110 | EnsemblPlantsGene:PGSC0003DMG400022824 | PGSC:PGSC0003DMG400022824 |
| EnsemblPlants:PGSC0003DMT400058753 | PIRSF:PIRSF037575 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom |
| InterPro:SBP_fam | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0002951206 | RefSeq:XP_006361029.1 | SEG:seg |
Description
Squamosa promoter binding [Source:PGSC_GENE;Acc:PGSC0003DMG400022824]
Coordinates
chr10:+:4670797..4674532
Molecular Weight (calculated)
15556.1 Da
IEP (calculated)
8.071
GRAVY (calculated)
-1.294
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSKWEGKR NMEEEDDEED ENAVEDTKRK RVLTRSGRKV SMGEGSRQPS CQVEDCTADM VNAKTYHCRH KVCEFHAKAP AVLIDGLRQR FCQQCSRFHQ
101: LAEFDDAKKS CRRRLAGHNE RRRKSAHDSP GEGSS
101: LAEFDDAKKS CRRRLAGHNE RRRKSAHDSP GEGSS
001: MSMRRSKAEG KRSLRELSEE EEEEEETEDE DTFEEEEALE KKQKGKATSS SGVCQVESCT ADMSKAKQYH KRHKVCQFHA KAPHVRISGL HQRFCQQCSR
101: FHALSEFDEA KRSCRRRLAG HNERRRKSTT D
101: FHALSEFDEA KRSCRRRLAG HNERRRKSTT D
Arabidopsis Description
SPL3Squamosa promoter-binding-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P93015]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.