Factsheet for PGSC0003DMT400082789

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053810.2.1	Tomato	nucleus	82.42	92.52
PGSC0003DMT400058753	Potato	nucleus	41.82	51.11
PGSC0003DMT400076399	Potato	nucleus	39.39	47.79
VIT_12s0028g03350.t01	Wine grape	nucleus	47.88	46.75
PGSC0003DMT400085174	Potato	nucleus	35.15	43.61
GSMUA_Achr1P08440_001	Banana	nucleus	46.06	40.64
GSMUA_Achr4P23650_001	Banana	nucleus	45.45	40.11
TraesCS2D01G232800.1	Wheat	nucleus	45.45	39.06
TraesCS2A01G232400.1	Wheat	nucleus	45.45	39.06
KRH22367	Soybean	nucleus	36.97	38.61
TraesCS2B01G250900.1	Wheat	nucleus	44.85	38.54
GSMUA_Achr2P03070_001	Banana	nucleus	43.64	33.49
HORVU2Hr1G048280.2	Barley	plastid	39.39	33.33
PGSC0003DMT400074976	Potato	nucleus	36.36	20.48
PGSC0003DMT400066955	Potato	nucleus	36.36	19.87
PGSC0003DMT400029751	Potato	nucleus	38.79	17.2
PGSC0003DMT400056374	Potato	nucleus	31.52	16.3
PGSC0003DMT400059813	Potato	nucleus	38.18	13.82
PGSC0003DMT400068752	Potato	nucleus	31.52	13.51
PGSC0003DMT400084734	Potato	nucleus	35.15	12.47
PGSC0003DMT400063046	Potato	nucleus	38.79	12.4
PGSC0003DMT400072745	Potato	nucleus	39.39	11.65

Protein Annotations

EntrezGene:102605185	MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
InterPro:IPR004333	InterPro:IPR036893	UniProt:M1D693	PFAM:PF03110	EnsemblPlantsGene:PGSC0003DMG400032817	PGSC:PGSC0003DMG400032817
EnsemblPlants:PGSC0003DMT400082789	PFscan:PS51141	PANTHER:PTHR31251	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612
UniParc:UPI0002961082	RefSeq:XP_006367482.1	SEG:seg	:	:	:

Description

Squamosa promoter binding [Source:PGSC_GENE;Acc:PGSC0003DMG400032817]

Coordinates

chr7:+:49394603..49398305

Molecular Weight (calculated)

18813.8 Da

IEP (calculated)

10.444

GRAVY (calculated)

-1.092

Length

165 amino acids

Sequence
(BLAST)

001: METANNNQLK SMEKNDDFLV ISTSENAKKK IITTNNNNNK KLSSSSNSSS SSSSLIRSCQ AEKCNVDLSD AKQYHKRHKV CEYHAKAQVV VVAGLRQRFC
101: QQCSRFHELT EFDESKRSCR RRLAGHNERR RKSTSSSSSS SSTDQSHRIH ISIQENSTHK NIHLR

Best Arabidopsis Sequence Match ( AT3G15270.1 )
(BLAST)

001: MEGQRTQRRG YLKDKATVSN LVEEEMENGM DGEEEDGGDE DKRKKVMERV RGPSTDRVPS RLCQVDRCTV NLTEAKQYYR RHRVCEVHAK ASAATVAGVR
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R

Arabidopsis Description

SPL5SPL5 [Source:UniProtKB/TrEMBL;Acc:A0A178VL13]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.