Factsheet for PGSC0003DMT400029751

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078700.1.1	Tomato	nucleus	97.85	97.85
VIT_08s0007g06270.t01	Wine grape	nucleus	61.02	59.89
KRG95361	Soybean	nucleus	48.39	50.14
KRH67040	Soybean	nucleus	48.39	49.05
GSMUA_Achr4P03880_001	Banana	nucleus	35.48	46.32
KRH38141	Soybean	nucleus, plastid	45.7	45.58
PGSC0003DMT400076399	Potato	nucleus	16.13	44.12
PGSC0003DMT400085174	Potato	nucleus	15.59	43.61
KRH71914	Soybean	nucleus, plastid	41.67	43.3
GSMUA_Achr9P22260_001	Banana	nucleus	39.78	43.15
PGSC0003DMT400058753	Potato	nucleus	15.59	42.96
GSMUA_Achr7P20510_001	Banana	nucleus	38.17	41.64
CDY61750	Canola	nucleus	32.8	39.61
AT2G42200.1	Thale cress	nucleus	39.78	39.47
CDX67715	Canola	nucleus	33.33	39.24
CDX98259	Canola	nucleus	34.14	39.08
Bra003305.1-P	Field mustard	nucleus	33.06	38.92
PGSC0003DMT400082789	Potato	nucleus	17.2	38.79
CDY06881	Canola	nucleus	37.37	38.29
CDX79888	Canola	nucleus	37.63	38.04
Bra016891.1-P	Field mustard	nucleus	36.56	37.47
Bra014599.1-P	Field mustard	nucleus	30.38	37.42
CDY47656	Canola	nucleus	32.53	37.35
GSMUA_Achr8P25550_001	Banana	nucleus	34.41	37.21
CDY14818	Canola	nucleus	36.56	37.06
AT3G57920.1	Thale cress	nucleus	35.22	37.01
Bra004674.1-P	Field mustard	nucleus	36.56	36.86
CDY53504	Canola	nucleus	36.56	36.76
GSMUA_Achr6P22280_001	Banana	nucleus	38.98	35.28
GSMUA_Achr9P20220_001	Banana	nucleus	22.58	34.15
GSMUA_Achr4P01450_001	Banana	nucleus	32.53	33.89
GSMUA_Achr9P27660_001	Banana	nucleus	33.06	33.33
GSMUA_Achr7P02020_001	Banana	nucleus	30.65	32.95
GSMUA_Achr3P11170_001	Banana	nucleus	32.26	30.93
TraesCS5B01G265600.2	Wheat	nucleus	32.8	30.81
TraesCS7D01G245200.2	Wheat	nucleus	31.18	30.13
TraesCS5D01G273900.2	Wheat	nucleus	32.8	29.9
EER99092	Sorghum	nucleus	31.18	29.9
TraesCS7B01G144900.1	Wheat	nucleus	30.91	29.79
TraesCS7A01G246500.1	Wheat	nucleus	30.91	29.79
Zm00001d020941_P001	Maize	nucleus	30.11	29.63
HORVU5Hr1G073440.7	Barley	nucleus	33.06	29.57
TraesCS5A01G265900.2	Wheat	nucleus	32.53	29.44
Os09t0491532-01	Rice	nucleus	25.54	29.41
EES14266	Sorghum	nucleus	31.45	28.61
Zm00001d031451_P001	Maize	nucleus	30.65	28.29
Zm00001d052890_P001	Maize	nucleus	30.65	27.94
Zm00001d006028_P001	Maize	nucleus	28.76	27.94
Os08t0509600-01	Rice	nucleus	30.38	27.1
PGSC0003DMT400074976	Potato	nucleus	20.43	25.94
PGSC0003DMT400056374	Potato	nucleus	22.04	25.71
PGSC0003DMT400066955	Potato	nucleus	19.35	23.84
PGSC0003DMT400084734	Potato	nucleus	26.88	21.51
PGSC0003DMT400068752	Potato	nucleus	21.77	21.04
PGSC0003DMT400059813	Potato	nucleus	24.19	19.74
PGSC0003DMT400072745	Potato	nucleus	25.54	17.03
PGSC0003DMT400063046	Potato	nucleus	20.7	14.92

Protein Annotations

EntrezGene:102579824	MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
InterPro:IPR004333	InterPro:IPR036893	UniProt:M1ATC3	PFAM:PF03110	EnsemblPlantsGene:PGSC0003DMG400011433	PGSC:PGSC0003DMG400011433
EnsemblPlants:PGSC0003DMT400029751	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF56	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	UniParc:UPI0001875257	RefSeq:XP_006362236.1	SEG:seg	:	:

Description

Promoter-binding protein SPL9 [Source:PGSC_GENE;Acc:PGSC0003DMG400011433]

Coordinates

chr10:+:58975986..58981597

Molecular Weight (calculated)

39983.0 Da

IEP (calculated)

8.731

GRAVY (calculated)

-0.722

Length

372 amino acids

Sequence
(BLAST)

001: MELGSVSSSG NSSSSDSLNG LKFGKKIYFG NVGVGVQVKN GSGSSPVTGD GNMPPAPATT KRGRGGLVQG GHPPRCQVEG CQADLSDAKA YYSRHKVCGM
101: HSKSPTVVVA GLEQRFCQQC SRFHQLTEFD QGKRSCRRRL ACHNERRRKP PSGSLFSTHY GNLSSSIFEN NSSRSGSFLV DFSSHQNVND SSWPNTRASE
201: QGWDHQSSGK FLQRPWLNNS ENAASELVLQ GSATRTSYPS VPSGDYFPGV SDSSGALSLL SNRSWGSRNR SPSLGVNSQV HIDGVHTIQP SGSHGAPTNH
301: FSSPSLSFKG NEASSSSHEM PPDLGLGQML QASDNPYCGE LGMAQHGDGR QYMELDQSKG YHPSVQNVHW TL

Best Arabidopsis Sequence Match ( AT2G42200.1 )
(BLAST)

001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL

Arabidopsis Description

SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.