Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79888 | Canola | nucleus | 98.11 | 98.64 |
| Bra004674.1-P | Field mustard | nucleus | 97.3 | 97.56 |
| CDY06881 | Canola | nucleus | 86.76 | 88.43 |
| CDY14818 | Canola | nucleus | 87.3 | 88.01 |
| AT2G42200.1 | Thale cress | nucleus | 86.22 | 85.07 |
| CDX98259 | Canola | nucleus | 47.57 | 54.15 |
| CDX67715 | Canola | nucleus | 45.14 | 52.85 |
| CDY61750 | Canola | nucleus | 41.89 | 50.32 |
| CDY47656 | Canola | nucleus | 44.05 | 50.31 |
| VIT_08s0007g06270.t01 | Wine grape | nucleus | 46.76 | 45.65 |
| KRH67040 | Soybean | nucleus | 42.16 | 42.51 |
| KRG95361 | Soybean | nucleus | 40.27 | 41.5 |
| KRH38141 | Soybean | nucleus, plastid | 38.65 | 38.34 |
| CDY37684 | Canola | nucleus | 14.59 | 38.3 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 29.19 | 37.89 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 34.59 | 37.54 |
| KRH71914 | Soybean | nucleus, plastid | 36.22 | 37.43 |
| CDY27935 | Canola | nucleus | 14.86 | 37.41 |
| CDY17204 | Canola | nucleus | 14.32 | 37.32 |
| CDY57212 | Canola | nucleus | 14.05 | 36.88 |
| PGSC0003DMT400029751 | Potato | nucleus | 36.76 | 36.56 |
| Solyc10g078700.1.1 | Tomato | nucleus | 36.76 | 36.56 |
| CDY50515 | Canola | nucleus | 15.41 | 36.31 |
| CDY24113 | Canola | nucleus | 15.41 | 35.4 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 31.89 | 34.3 |
| CDY25876 | Canola | nucleus | 16.22 | 34.09 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 31.08 | 33.53 |
| CDY61210 | Canola | nucleus | 15.68 | 32.4 |
| CDY20128 | Canola | nucleus | 15.41 | 32.39 |
| CDY32310 | Canola | nucleus | 15.14 | 31.82 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 29.73 | 31.79 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 30.27 | 31.37 |
| CDX98540 | Canola | nucleus | 14.86 | 30.73 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 34.05 | 30.66 |
| CDX97645 | Canola | nucleus | 14.59 | 30.17 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 19.73 | 29.67 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 29.46 | 29.54 |
| Zm00001d006028_P001 | Maize | nucleus | 30.27 | 29.24 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 30.54 | 29.12 |
| Zm00001d020941_P001 | Maize | nucleus | 29.73 | 29.1 |
| CDX95958 | Canola | nucleus | 22.97 | 28.43 |
| EER99092 | Sorghum | nucleus | 29.46 | 28.09 |
| TraesCS7B01G144900.1 | Wheat | nucleus | 29.19 | 27.98 |
| CDX79544 | Canola | nucleus | 14.05 | 27.81 |
| TraesCS7D01G245200.2 | Wheat | nucleus | 28.92 | 27.79 |
| TraesCS5B01G265600.2 | Wheat | nucleus | 29.73 | 27.78 |
| TraesCS7A01G246500.1 | Wheat | nucleus | 28.92 | 27.72 |
| Os09t0491532-01 | Rice | nucleus | 23.78 | 27.24 |
| TraesCS5D01G273900.2 | Wheat | nucleus | 30.0 | 27.21 |
| CDY69014 | Canola | nucleus | 23.24 | 26.96 |
| TraesCS5A01G265900.2 | Wheat | nucleus | 29.73 | 26.76 |
| EES14266 | Sorghum | nucleus | 29.19 | 26.41 |
| HORVU5Hr1G073440.7 | Barley | nucleus | 29.46 | 26.2 |
| Zm00001d031451_P001 | Maize | nucleus | 28.38 | 26.05 |
| CDY50300 | Canola | nucleus | 22.97 | 25.91 |
| CDX96251 | Canola | nucleus | 22.97 | 25.91 |
| Os08t0509600-01 | Rice | nucleus | 28.92 | 25.66 |
| CDX81606 | Canola | nucleus | 22.97 | 25.53 |
| Zm00001d052890_P001 | Maize | nucleus | 28.11 | 25.49 |
| CDY45826 | Canola | nucleus | 22.16 | 24.05 |
| CDX84872 | Canola | nucleus | 22.16 | 24.05 |
| CDX71667 | Canola | nucleus | 22.7 | 23.4 |
| CDY43604 | Canola | nucleus | 24.32 | 23.38 |
| CDY34028 | Canola | nucleus | 21.35 | 22.7 |
| CDY32959 | Canola | nucleus | 23.78 | 22.56 |
| CDY27612 | Canola | nucleus | 20.0 | 22.49 |
| CDY03913 | Canola | nucleus | 22.43 | 22.37 |
| CDY67700 | Canola | nucleus | 20.81 | 22.25 |
| CDX84928 | Canola | nucleus | 21.35 | 21.7 |
| CDY27611 | Canola | nucleus | 21.35 | 21.64 |
| CDX84927 | Canola | nucleus | 21.35 | 21.53 |
| CDY15713 | Canola | nucleus | 22.43 | 21.28 |
| CDY38043 | Canola | nucleus | 19.19 | 21.19 |
| CDY11816 | Canola | nucleus | 20.81 | 21.1 |
| CDX90071 | Canola | nucleus | 17.57 | 20.83 |
| CDY03914 | Canola | nucleus | 20.81 | 20.7 |
| CDY15712 | Canola | nucleus | 20.81 | 20.59 |
| CDY15132 | Canola | nucleus | 12.43 | 19.74 |
| CDY47812 | Canola | nucleus | 24.05 | 17.25 |
| CDY22356 | Canola | nucleus | 23.78 | 16.96 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.62 | 10.34 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078IVQ8 | UniProt:A0A078IVQ8 | EnsemblPlants:CDY53504 | ProteinID:CDY53504 |
| ProteinID:CDY53504.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00010840001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom |
| InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EBEF41 | SEG:seg | : | : |
Description
BnaC04g02520DBnaC04g02520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVQ8]
Coordinates
chrLK033208:-:61948..64116
Molecular Weight (calculated)
40337.6 Da
IEP (calculated)
8.230
GRAVY (calculated)
-0.850
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRGSNSGLG LGPGQTESGG SSTESSSLSG GLMFGQRIYF EDAGGGTGFS SSGGSNRRVR GSGSGPSGQI PRCQVEGCGM DLTNAKGYYT RHRVCGMHSK
101: TPKVIVAGIE QRFCQQCSRF HQLPEFDLEK RSCRRRLAGH NERRRKPQPA SLSVLSSRYG RITPSLYGNG ETTMNGSFLG SQEMGWNSAR TLDTRVMRRP
201: PSWQINPMNV FSQGSVSGGG GGGINFSSPE IMDTKPESYK GIGSDSNCAL SLLSNPHQPH DNNNSNNTWR TSSGFGPMTV TMAQPPPAPS QQHQYLNPPW
301: VFKDDDNNCP NDMSPVLNLG RFTETEISGG TTLGEFELSD HHHHQNRTQY MESENTRAYD SSSHHNNWSL
101: TPKVIVAGIE QRFCQQCSRF HQLPEFDLEK RSCRRRLAGH NERRRKPQPA SLSVLSSRYG RITPSLYGNG ETTMNGSFLG SQEMGWNSAR TLDTRVMRRP
201: PSWQINPMNV FSQGSVSGGG GGGINFSSPE IMDTKPESYK GIGSDSNCAL SLLSNPHQPH DNNNSNNTWR TSSGFGPMTV TMAQPPPAPS QQHQYLNPPW
301: VFKDDDNNCP NDMSPVLNLG RFTETEISGG TTLGEFELSD HHHHQNRTQY MESENTRAYD SSSHHNNWSL
001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
Arabidopsis Description
SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.