Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25876 | Canola | nucleus | 88.53 | 78.98 |
| Bra038101.1-P | Field mustard | nucleus | 91.72 | 78.69 |
| CDY61210 | Canola | nucleus | 80.25 | 70.39 |
| CDY24113 | Canola | nucleus | 71.34 | 69.57 |
| AT1G53160.1 | Thale cress | nucleus | 72.61 | 65.52 |
| CDX98540 | Canola | nucleus | 66.24 | 58.1 |
| CDX97645 | Canola | nucleus | 66.24 | 58.1 |
| CDY20128 | Canola | nucleus | 64.97 | 57.95 |
| CDY32310 | Canola | nucleus | 63.06 | 56.25 |
| VIT_10s0003g00050.t01 | Wine grape | nucleus | 48.41 | 54.29 |
| Solyc10g009080.2.1 | Tomato | nucleus | 46.5 | 54.07 |
| PGSC0003DMT400058753 | Potato | nucleus | 45.86 | 53.33 |
| CDY27935 | Canola | nucleus | 49.68 | 53.06 |
| CDY17204 | Canola | nucleus | 47.77 | 52.82 |
| PGSC0003DMT400076399 | Potato | nucleus | 43.95 | 50.74 |
| Solyc02g077920.2.1 | Tomato | nucleus | 43.31 | 50.0 |
| CDY57212 | Canola | nucleus | 41.4 | 46.1 |
| CDY37684 | Canola | nucleus | 40.76 | 45.39 |
| KRH20415 | Soybean | nucleus | 40.13 | 44.37 |
| KRH50085 | Soybean | nucleus | 40.76 | 43.84 |
| KRH10909 | Soybean | nucleus | 38.22 | 43.48 |
| KRH21401 | Soybean | nucleus | 38.22 | 43.48 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 14.01 | 37.93 |
| CDX79544 | Canola | nucleus | 43.95 | 36.9 |
| Os07t0505200-01 | Rice | nucleus | 40.76 | 29.63 |
| EER97257 | Sorghum | nucleus | 38.22 | 27.91 |
| Zm00001d021573_P001 | Maize | mitochondrion | 35.03 | 26.7 |
| KXG36284 | Sorghum | nucleus | 36.31 | 26.15 |
| Zm00001d006451_P001 | Maize | mitochondrion | 38.85 | 24.02 |
| CDY61750 | Canola | nucleus | 35.67 | 18.18 |
| CDX98259 | Canola | nucleus | 37.58 | 18.15 |
| CDX95958 | Canola | nucleus | 34.39 | 18.06 |
| CDX90071 | Canola | nucleus | 35.03 | 17.63 |
| CDY47656 | Canola | nucleus | 36.31 | 17.59 |
| CDY38043 | Canola | nucleus | 36.31 | 17.01 |
| CDY50300 | Canola | nucleus | 35.03 | 16.77 |
| CDY69014 | Canola | nucleus | 33.76 | 16.61 |
| CDX96251 | Canola | nucleus | 34.39 | 16.46 |
| CDX71667 | Canola | nucleus | 37.58 | 16.43 |
| CDX67715 | Canola | nucleus | 32.48 | 16.14 |
| CDY45826 | Canola | nucleus | 35.03 | 16.13 |
| CDY34028 | Canola | nucleus | 35.67 | 16.09 |
| CDX81606 | Canola | nucleus | 33.76 | 15.92 |
| CDX84872 | Canola | nucleus | 34.39 | 15.84 |
| CDY14818 | Canola | nucleus | 36.94 | 15.8 |
| CDX79888 | Canola | nucleus | 36.31 | 15.49 |
| CDY06881 | Canola | nucleus | 35.67 | 15.43 |
| CDY53504 | Canola | nucleus | 36.31 | 15.41 |
| CDY15132 | Canola | nucleus | 22.29 | 15.02 |
| CDY27612 | Canola | nucleus | 30.57 | 14.59 |
| CDY67700 | Canola | nucleus | 31.21 | 14.16 |
| CDX84927 | Canola | nucleus | 32.48 | 13.9 |
| CDY03913 | Canola | nucleus | 32.48 | 13.75 |
| CDY15713 | Canola | nucleus | 33.76 | 13.59 |
| CDX84928 | Canola | nucleus | 31.21 | 13.46 |
| CDY11816 | Canola | nucleus | 31.21 | 13.42 |
| CDY27611 | Canola | nucleus | 31.21 | 13.42 |
| CDY15712 | Canola | nucleus | 31.85 | 13.37 |
| CDY03914 | Canola | nucleus | 31.21 | 13.17 |
| CDY32959 | Canola | nucleus | 32.48 | 13.08 |
| CDY43604 | Canola | nucleus | 31.85 | 12.99 |
| CDY22356 | Canola | nucleus | 33.12 | 10.02 |
| CDY47812 | Canola | nucleus | 32.48 | 9.88 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078IHT0 | UniProt:A0A078IHT0 | EnsemblPlants:CDY50515 | ProteinID:CDY50515 |
| ProteinID:CDY50515.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00096923001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PIRSF:PIRSF037575 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF64 |
| InterPro:SBP_dom | InterPro:SBP_fam | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EDCDB0 | SEG:seg |
Description
BnaC06g10070DSquamosa promoter-binding-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHT0]
Coordinates
chrLK032919:+:96916..99009
Molecular Weight (calculated)
18104.4 Da
IEP (calculated)
10.371
GRAVY (calculated)
-1.327
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKKAQGLG YLKKKASMSS YQEEEEVERE EEKRKGVMDR SKGSSSNRVS SRLCQVDRCT TDLKEDKQYH RRHKVCEVHA KASSVYLAGV KQRFCQQCSR
101: FHELPEFDEA KRSCRRRLAG HNERRRKSSG ESFGEGSGGR RGVTGQVMQN QERSKIR
101: FHELPEFDEA KRSCRRRLAG HNERRRKSSG ESFGEGSGGR RGVTGQVMQN QERSKIR
001: MEGKRSQGQG YMKKKSYLVE EDMETDTDEE EEVGRDRVRG SRGSINRGGS LRLCQVDRCT ADMKEAKLYH RRHKVCEVHA KASSVFLSGL NQRFCQQCSR
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRIRVR SVTYPKAQGN Y
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRIRVR SVTYPKAQGN Y
Arabidopsis Description
SPL4Squamosa promoter-binding-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.