Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032823.1-P | Field mustard | nucleus | 98.78 | 99.09 |
| CDX84927 | Canola | nucleus | 92.1 | 82.56 |
| CDY67700 | Canola | nucleus | 69.6 | 66.19 |
| CDY03914 | Canola | nucleus | 72.04 | 63.71 |
| CDY11816 | Canola | nucleus | 70.52 | 63.56 |
| CDY15712 | Canola | nucleus | 72.04 | 63.37 |
| CDY27611 | Canola | nucleus | 69.91 | 63.01 |
| CDX84928 | Canola | nucleus | 68.69 | 62.09 |
| AT1G27360.1 | Thale cress | nucleus | 72.34 | 60.56 |
| CDY15713 | Canola | nucleus | 71.43 | 60.26 |
| CDY03913 | Canola | nucleus | 65.96 | 58.49 |
| Os02t0139400-01 | Rice | nucleus | 32.52 | 37.94 |
| CDY17204 | Canola | nucleus | 15.81 | 36.62 |
| CDY27935 | Canola | nucleus | 16.11 | 36.05 |
| CDY37684 | Canola | nucleus | 15.2 | 35.46 |
| CDY57212 | Canola | nucleus | 15.2 | 35.46 |
| Os02t0174100-02 | Rice | nucleus | 25.84 | 33.86 |
| CDY24113 | Canola | nucleus | 15.2 | 31.06 |
| CDY50515 | Canola | nucleus | 14.59 | 30.57 |
| CDY32959 | Canola | nucleus | 35.56 | 30.0 |
| CDY43604 | Canola | nucleus | 34.04 | 29.09 |
| KRG97402 | Soybean | nucleus | 37.08 | 28.18 |
| CDX97645 | Canola | nucleus | 15.2 | 27.93 |
| KRH31506 | Soybean | nucleus | 37.08 | 27.54 |
| CDY61210 | Canola | nucleus | 14.89 | 27.37 |
| CDX79544 | Canola | nucleus | 15.5 | 27.27 |
| CDX98540 | Canola | nucleus | 14.59 | 26.82 |
| CDY20128 | Canola | nucleus | 14.29 | 26.7 |
| CDY25876 | Canola | nucleus | 14.29 | 26.7 |
| CDY32310 | Canola | nucleus | 14.29 | 26.7 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 33.74 | 26.68 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 36.78 | 26.02 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 27.36 | 26.01 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 35.87 | 25.99 |
| Zm00001d015410_P002 | Maize | nucleus | 26.14 | 25.9 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 35.87 | 25.76 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 27.36 | 25.71 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 25.53 | 25.61 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 25.23 | 25.54 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 25.23 | 25.38 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 33.74 | 25.34 |
| EES04609 | Sorghum | nucleus | 25.84 | 25.22 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 33.13 | 25.17 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 24.92 | 25.15 |
| Zm00001d053775_P001 | Maize | nucleus | 24.92 | 24.77 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 35.26 | 24.73 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 34.65 | 24.57 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 35.26 | 24.52 |
| CDY47812 | Canola | nucleus | 38.3 | 24.42 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 34.95 | 24.31 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 34.65 | 24.0 |
| EES04495 | Sorghum | nucleus | 34.65 | 23.75 |
| CDY22356 | Canola | nucleus | 37.08 | 23.51 |
| GSMUA_Achr10P... | Banana | nucleus | 34.35 | 23.2 |
| OQU77017 | Sorghum | nucleus | 30.7 | 22.95 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 35.26 | 22.88 |
| CDX95958 | Canola | nucleus | 20.67 | 22.74 |
| Zm00001d014698_P001 | Maize | nucleus | 30.09 | 22.55 |
| Os06t0703500-02 | Rice | nucleus | 32.52 | 22.53 |
| Os06t0663500-00 | Rice | nucleus | 23.4 | 22.45 |
| CDX90071 | Canola | nucleus | 20.97 | 22.12 |
| GSMUA_Achr10P... | Banana | nucleus | 33.74 | 22.02 |
| CDY15132 | Canola | nucleus | 15.5 | 21.89 |
| CDY69014 | Canola | nucleus | 20.97 | 21.63 |
| CDY61750 | Canola | nucleus | 20.06 | 21.43 |
| CDY50300 | Canola | nucleus | 20.97 | 21.04 |
| Zm00001d053890_P003 | Maize | nucleus | 30.7 | 20.95 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 33.74 | 20.9 |
| CDY38043 | Canola | nucleus | 21.28 | 20.9 |
| CDX96251 | Canola | nucleus | 20.67 | 20.73 |
| CDX81606 | Canola | nucleus | 20.97 | 20.72 |
| CDY47656 | Canola | nucleus | 20.36 | 20.68 |
| CDX79888 | Canola | nucleus | 22.8 | 20.38 |
| CDX98259 | Canola | nucleus | 20.06 | 20.31 |
| CDY06881 | Canola | nucleus | 22.19 | 20.11 |
| CDX71667 | Canola | nucleus | 21.88 | 20.06 |
| CDY53504 | Canola | nucleus | 22.49 | 20.0 |
| CDY14818 | Canola | nucleus | 22.19 | 19.89 |
| CDY45826 | Canola | nucleus | 20.36 | 19.65 |
| CDX67715 | Canola | nucleus | 18.84 | 19.62 |
| CDX84872 | Canola | nucleus | 19.76 | 19.06 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 30.4 | 18.98 |
| CDY34028 | Canola | nucleus | 20.06 | 18.97 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.91 | 5.17 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078GR33 | UniProt:A0A078GR33 | EnsemblPlants:CDY27612 | ProteinID:CDY27612 |
| ProteinID:CDY27612.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00038358001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom |
| InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EE692F | SEG:seg | : | : |
Description
BnaA09g27950DBnaA09g27950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GR33]
Coordinates
chrLK032207:-:294820..296086
Molecular Weight (calculated)
36766.8 Da
IEP (calculated)
9.134
GRAVY (calculated)
-0.840
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCNMTSPLW DWDHFLMSNP SKPENDKRRP SSEWGIEKGE GIESIFPSFE RVSSGGSTTG FSTSSSSPIF RHANLPSETS PGDSFSNIDF VQVKTSTAES
101: DLCLKLGKQT YSEDFWGRSN NEVSAVSVKL LAPSVVARKK SKPYGQSSMQ VPRCQVDGCE LDLSSAKDYH RKHRVCETHS KCPKVTVGGL ERRFCQQCSR
201: LHAVSEFDEK KRSCRKRLSH HNARRRKPQG VFPLNPERNC NGRQHPNMLW NGLSLNTVPD EKYVWSPSYD TKPTQMESGF TLSFQRGRGP EEHLYAGSSR
301: SFSTFQTSGG FSAGRSNSQL PGKAGVGEY
101: DLCLKLGKQT YSEDFWGRSN NEVSAVSVKL LAPSVVARKK SKPYGQSSMQ VPRCQVDGCE LDLSSAKDYH RKHRVCETHS KCPKVTVGGL ERRFCQQCSR
201: LHAVSEFDEK KRSCRKRLSH HNARRRKPQG VFPLNPERNC NGRQHPNMLW NGLSLNTVPD EKYVWSPSYD TKPTQMESGF TLSFQRGRGP EEHLYAGSSR
301: SFSTFQTSGG FSAGRSNSQL PGKAGVGEY
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKG
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKG
Arabidopsis Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.